<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12263

Description probable mediator of RNA polymerase II transcription subunit 26c isoform X2
SequenceMELDEFRLMLENSSVDLWTFIDTAISVAILDHGNELLSRRDAIVEKLYAPLLCKNCNSAGNCEDLETKIIRIKKLLENPNQSENCLVELLQTLAEMDINFKVLEITDVGRHVNRLRKHSSNEVRRLVKLLIRRWKDIVDEWVRLNTQAEETGDANSPFQPHLNNNFQERAPLYGISSNGSSSYCAHKSIENNNITPSSKRLREDYLEAHHVGVLNKRTREVGFLDVRKQKKL
Length232
PositionUnknown
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.522
Instability index41.69
Isoelectric point6.67
Molecular weight26765.15
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12263
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.68|      11|      21|      52|      62|       2
---------------------------------------------------------------------------
   52-   62 (23.31/15.51)	LCKNCNSAGNC
   75-   85 (21.37/13.69)	LLENPNQSENC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.52|      15|      15|     189|     203|       4
---------------------------------------------------------------------------
  189-  203 (25.19/16.55)	IENNNITPSSKRLRE
  206-  220 (25.33/16.68)	LEAHHVGVLNKRTRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12263 with Med26 domain of Kingdom Viridiplantae
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