<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12223

Description mediator of RNA polymerase II transcription subunit 30-like
SequenceMDEKGGTMTNPKTIQELAVEGQKHLEDTIEAAHQILSAMNDELCNPTLWSTTTNTATTANAVMNNGNGHQHSVNGDVSSDNSSSSSASAQQHSEIGGGALDESRLRYKLSVASLRSVLTAISNSQKAKALEAASASGSLSAADQSEIEQLEDRASTLKKELVDKNKHLKLLIDQFRDLLSDLSTWQSPCST
Length191
PositionHead
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.02
Grand average of hydropathy-0.551
Instability index34.68
Isoelectric point5.06
Molecular weight20384.16
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12223
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.98|      14|      18|      69|      82|       1
---------------------------------------------------------------------------
   69-   82 (25.82/15.76)	HQHSVNGDVSSDNS
   90-  103 (25.16/15.19)	QQHSEIGGGALDES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.96|      17|      18|     109|     125|       2
---------------------------------------------------------------------------
  109-  125 (25.86/14.46)	LSVASLRSVLTAISNSQ
  130-  146 (26.10/14.65)	LEAASASGSLSAADQSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.25|      25|     141|      13|      37|       3
---------------------------------------------------------------------------
   13-   37 (40.38/26.10)	TIQELAVEGQKHLEDTIEAAHQILS
  156-  180 (39.88/25.70)	TLKKELVDKNKHLKLLIDQFRDLLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12223 with Med30 domain of Kingdom Viridiplantae
Unable to open file!