<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12222

Description U-box domain-containing protein 52-like
SequenceMVKSGSSRDDTTVAVAIDRDKNSQHAVRWAVDNLNIKNGQMVLIHVHVQENLHSHSHNMIPKEGHSPSLAEMNQFFLPYRGICARKGIQAKEVILQDDDVAHALAEYITQTFITTIVVGASTRNALARAFKNQDVPSSLTRSVPEFCSIYAISRGKVLKLKSASQPATPSSKASSGQSSQTGSTQDSPVSQALTAHGSWRSTGSSEFIGAGSQSISFDSSNASDRLPVSQNASPNYSSASECTPQALSDSQHSSTTPSPNYQSVNNINDLIKKTQLVRQPGSKNLTPAQSLEHSGELGEGMPQPELPGSSETSSQNAVDPNLDFIQILNDRHLGNLIPSAQYPVNNLNLRIHTKENSSYSTSGSSNLSGSSNFRSSDMSFEHLDSCHISDASRCSVSSQNAAELEEEMKRLKLELKQTLDMYNETCRRQAREIDHLKSEEACKLEEAKEAQVAARAMVEKEKQKCKAALEVARMAQQIAELESEKRKRVEQNFLHEAEEMKKAQDAFARSAIRYRRYSIDEIEAATNYFSNSKKIGEGGYGPVYKAYLDHTAVAIKVLRSDMSQGQTQFQQELEVLNRLRHPNVVLLLGACPEYGCLVYEYMENGSLEDRLFCKNQSPPIPWPARFRIAAEIAAALHFFHRSRPEPIVHRDLKPANILLDTNYKSKISDVGLARLVPASVSDSVTQYIMTSAAGTFCYIDPEYQQTGMLNPKSDIYSLGIMLLQIITARPPMGLTHHVERSIEKGNFDDILDPSVNDWPLEEALSLAKLALKCCELRRKDRPDLGSDILPELERLKDFALDYRRRGRFTSRPTSSQESLAVTEEVRSGISDNQSDKVP
Length838
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.539
Instability index54.38
Isoelectric point6.28
Molecular weight92853.04
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12222
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.80|      47|      51|     691|     740|       1
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  662-  691 (33.34/16.16)	...................NYKSKISDVG..LARLV....PASVSDS..VTQYIMTS
  692-  741 (79.60/58.58)	AAGTFCYI.DPEYQQTgmlNPKSDIYSLGIMLLQII....TARPPMG..LTHHVERS
  743-  794 (54.86/32.58)	EKGNFDDIlDPSVNDW....PLEEALSLAKLALKCCelrrKDRPDLGsdILPELER.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     340.00|      82|      83|     234|     316|       2
---------------------------------------------------------------------------
  162-  231 (79.47/42.68)	....SASQpATPSSKASSGQSSQTGS.................TQ..DSPVSQALTAHGSWRSTGSsefIGAGSQSISFDSSNASDrlpvSQN
  234-  316 (141.92/86.11)	PNYSSASE.CTPQALSDSQHSSTTPSPNYqSVNNINDLI..KKTQLVRQPGSKNLTPAQSLEHSGE...LGEGMPQPELPGSSETS....SQN
  320-  400 (118.61/67.44)	PNLDFI......QILNDRHLGNLIPSAQY.PVNNLNLRIhtKENSSYSTSGSSNLSGSSNFRSSDM...SFEHLDSCHISDASRCS..vsSQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.77|      16|      53|     440|     458|       3
---------------------------------------------------------------------------
  440-  458 (19.38/20.75)	EAcklEEAKEAQVA.ARAMV
  496-  512 (19.40/ 9.97)	EA...EEMKKAQDAfARSAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.30|      12|      75|     402|     414|       5
---------------------------------------------------------------------------
  402-  414 (15.77/13.33)	AELEEEmKRLKLE
  479-  490 (20.53/11.68)	AELESE.KRKRVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12222 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DSSNASDRLPVSQNASPNYSSASECTPQALSDSQHSSTTPSPNYQSVNNINDLIKKTQLVRQPGSKNLTPAQSLEHSGELGEGMPQPELPGSSETSSQNAVDPNLDF
2) KSASQPATPSSKASSGQSSQTGSTQDSPVSQALTAH
3) VNNLNLRIHTKENSSYSTSGSSNLSGSSNFR
218
161
344
324
196
374










Molecular Recognition Features






MoRF SequenceStartStop




1) DILPELERLKDFALDYRRRGRFTSR
787
811