<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12205

Description U-box domain-containing protein 52-like isoform X2
SequenceMWHPPQGVHGERMHPPNKLIAVAIDKDRGSQIALKWTVDHLLARGQTVLLIHVKLKQSATSTGQSTPTKSNQISDEAGSGNSELDPQTKELFLPFRVFCTRKDVQCHDVVLDDTDVVKAIVEYVNRTGIEVLILGATTRGGLLRFKAKDIPGGILKGVPDFCTVHVISKSAKIASTRAASRPAPFVHPLRHQLMQPASTKFAPFEGSTPSAASSRGPFSGGPKPVCDPPPSTLQSDTMNIKSPFTHRKGPNGKPYEISLPDTDISYVSSGRPSIDNIYSSFSDGYDGGGPTPPRLSGFSDFETQSFDSTQFGRRSVDTLTPPELSHSSIESDRPSVSQGPVDDMEAEMRRLKQELKQTMELYSTACREALTAKQKAMELQRWKQEEQRRLEEARLAEEAALALAEKEKAKSRAAIEHAEAAQRLAELEAQKRISAEMKALKEAEEKNKILNKLTNSDFRYRKYTIEEIESATDYFAQTRKIGEGGYGPVYKCYLDHTPVAVKVLRPDAAHGRQQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMSNGSLEDRLFHRGKTPPLSWQQRFRIAAEIATGLLFLHQSKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQILTAKPPMGLTHYVDRAIEKGTFNEMLDPAIPDWPVNEALSLAKLSLQCSELRRKDRPDLGKVVLPQLERLRALAEDNTCPSLMYNSNFSPNHSQVSLSRDNLSYPNTMPSSYESSRSQ
Length789
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy-0.481
Instability index48.96
Isoelectric point7.88
Molecular weight87667.58
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12205
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.56|      23|      28|     291|     317|       1
---------------------------------------------------------------------------
  291-  317 (34.62/27.68)	TPPRLSgFSDFETqsfDSTQFGRRSVD
  320-  342 (42.94/22.09)	TPPELS.HSSIES...DRPSVSQGPVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.90|      19|      37|     174|     208|       2
---------------------------------------------------------------------------
  174-  199 (29.57/34.13)	ASTRA..ASRPAPFVHPlrhqlmqPAST
  212-  232 (34.33/ 9.63)	ASSRGpfSGGPKPVCDP.......PPST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.10|      20|      23|     398|     419|       3
---------------------------------------------------------------------------
  385-  409 (25.38/18.68)	EEQRRLEEARlaeeaALALAEKEKA
  410-  429 (24.84/14.77)	KSRAAIEHAE....aAQRLAELE.A
  430-  447 (18.89/ 9.57)	QKRISAE......mkALKEAE.EKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.80|      19|     148|      98|     116|       4
---------------------------------------------------------------------------
   98-  116 (35.91/24.30)	FCTRK..DVQCHDVVLDDTDV
  244-  264 (30.89/19.89)	FTHRKgpNGKPYEISLPDTDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.96|      13|     397|     131|     143|       6
---------------------------------------------------------------------------
  131-  143 (22.60/12.29)	VLILGATTRGGLL
  531-  543 (26.35/15.42)	VLLLGACPEYGCL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12205 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASTKFAPFEGSTPSAASSRGPFSGGPKPVCDPPPSTLQSDTMNIKSPFTHRKGPNGKPYEISLPDTDISY
2) TQFGRRSVDTLTPPELSHSSIESDRPSVSQGPVDDMEAEMRRLKQE
197
309
266
354










Molecular Recognition Features






MoRF SequenceStartStop




NANANA