<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12190

Description uncharacterized protein LOC107776212
SequenceMDSADWRTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAAISQPDYLQKISLKMLTMETKSHNPMTNLSNAASSGQNAHDPGTARAGAAAGVMDAADWRTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQNPMTNSANAASSGQNAHDPGTAPAGAAAGDMDAVDWRTQLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQHPMTNSINAASSGQNALGPDIDSCQEREITQGSMKRKREDWGDNVEEHNDQILPTFTCEICTEVVPITKKFNNFHSCNHSFCSKCIERHVEVKIQLRIADIQCPYVDCGKLLDPLVCRTMIPLSIFEKWCDLLCKQAHLGFEKCYCPYQDCGELIVKECGDVVGKSECPNCRRLICFQCGLPWNVCEENGCSKVNDTLFKELVEQKQWTKCPSCNMYVERIAGCNHMQCRCNFSFCYKCGKSPTAQRRWCRCK
Length547
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.06
Grand average of hydropathy-0.483
Instability index40.68
Isoelectric point7.64
Molecular weight61747.21
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
metal ion binding	GO:0046872	IEA:UniProtKB-KW
transcription coactivator activity	GO:0003713	IEA:InterPro
transferase activity	GO:0016740	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12190
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     654.43|     107|     107|      86|     192|       1
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    1-   84 (162.97/112.72)	............................MDSADW.......RTQLLPDSRQRIVNNITETLKRQLSVTREEGVQELKKIAVGFEEKIYTAAISQPDYLQKISLKMLTMETKSHNPMTNL
   86-  192 (229.34/161.76)	NAASSGQNAHDPGT....ARAGAAAGV.MDAADW.......RTQLLPDFRQSIVNKITETLMRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETDSQNPMTNS
  194-  300 (229.61/161.96)	NAASSGQNAHDPGT....APAGAAAGD.MDAVDW.......RTQLLPDSRQRIVNKITETLKRHLPVTGEEGVQELKKIALRFEEKIYTAAISQPDYLRKISLKMLTMETKSQHPMTNS
  302-  358 (32.52/16.34)	NAASSGQNALGPDIdscqEREITQGSMkRKREDWgdnveehNDQILPTFTCEICTEV..............................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     189.67|      40|      40|     397|     436|       2
---------------------------------------------------------------------------
  397-  428 (56.86/40.78)	..................................CPYVDCGKLLDPLV.CRTMIPLSIFEKWCDLLC
  429-  470 (67.35/50.05)	KQAHLGFE.......................kcyCPYQDCGELIVK.E.CGDVVGKSECPNCRRLIC
  471-  530 (42.36/27.97)	FQCGLPWNvceengcskvndtlfkelveqkqwtkCP..SCNMYVERIAgCNHMQCRCNF.SFC....
  532-  546 (23.10/10.95)	......................................KCGK..SPTA.QR.........RWCR..C
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12190 with Med15 domain of Kingdom Viridiplantae
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