<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12153

Description mediator of RNA polymerase II transcription subunit 33A-like
SequenceMAAMVSSVQIQSNLWDGVMELTKSAQQKGTDPLMWAIQLSSNLNSAGLSMPSTDVANLLVSHICWANNVPIAWKFLEKALTLRVVPPMFVLALLSTRVIPARRSYPVAYRLYMELLKRYAFSLASLINGPNYQKIMEAINDTLHLYQIFGLQGSESGLIVVEFVFAIVWELLDASLDDEGLMELTAEKKSRWPITSQDMGLNNHDGFAGGRTEKHEGLCKMNTVMAIEIIGEFFRDKVTSAILYLARKNMPGHWESFTQNLRLLVSNSSALRNSKNISPEALLQLTSDNHVVLSRKRKTSSQKKFHAVVVSGSLASSADQCHGASPSVLWLPFDLFLEDTIDGSQVAATSAAETLTGLVKALQAVNSTTWQDTFLGLWIAALRLVNRVRIHDESLPFIVKLNSEIXANLIEEEERNCSSTNQTKESSRKRHQDLLSTLQQLDDYEGLLTPPLPAAPLANQAAAKAMMFLSGLRVGSGYFEGMSLNDMPVNCAGNLRHLIVEACIARNILDTSAYLWPGYVKGRCDQVPRSVSGQMPGWSSLMKGSPLTPPMVSSLVSTPASSLAEIEKIYDIAVNGSDDDKISAATILCGASLARGWNIQEHTVLFITRLLSPPVSANYSGTESHLIGYARFLNVLLIGVSSIDCVQIVSLHGLVPQLAGALMPICEAFGSCAPNVTWIVMSEEISSHAIFSNAFTLLLKLWRFDQPPRENVMDVVPVGSRLTPEYLLLVRNSQLASSDDLQKDQSKIKRLSRLSSPLSGEPIFMDSFPKLKLWYRQHQACIGSPLSGLLPGTPVHQIVEALLNFMFRKINRTGQSLAPTTSGSSSSSGPGNEDVFLHLKLPAWDILEAVPFVLDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKLASMNGTDWPSPAANLATVEQQIKKILAATGVNVPSLTVGGNSPATLPLPLAALVSLTITYKLDRSTDRFLNLMGPALSNLATACPWPCMPVM
Length996
PositionTail
OrganismNicotiana tabacum (Common tobacco)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Nicotianoideae> Nicotianeae> Nicotiana.
Aromaticity0.07
Grand average of hydropathy0.099
Instability index49.45
Isoelectric point6.46
Molecular weight108455.92
Publications
PubMed=24807620

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12153
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.17|      20|      67|     755|     774|       1
---------------------------------------------------------------------------
  682-  702 (30.04/15.82)	SEEISSHAIFSNAFTlLLKL..W
  755-  774 (40.03/23.44)	SSPLSGEPIFMDSFP.KLKL..W
  824-  844 (31.10/16.62)	SSSSSG.PGNEDVFL.HLKLpaW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.95|      63|     232|     197|     273|       2
---------------------------------------------------------------------------
  197-  266 (94.56/68.84)	QDM..GLNNHDGFAGGRTEKHEGLCKMNTVMAIEIIgeFFRD.KVTSAilY...LARKNMPghwESFTQNLRLLVS
  432-  500 (93.38/60.66)	QDLlsTLQQLDDYEGLLTPPLPAAPLANQAAAKAMM..FLSGlRVGSG..YfegMSLNDMP...VNCAGNLRHLIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.14|      16|     160|      16|      33|       3
---------------------------------------------------------------------------
   16-   33 (24.83/22.07)	DGVMELTksAQQKGTDPL
  179-  194 (30.31/19.80)	EGLMELT..AEKKSRWPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     184.00|      56|     301|     583|     642|       4
---------------------------------------------------------------------------
  537-  578 (55.44/31.62)	...............G.W.....SSLMKGSPLTPPmVSSLVSTPASSLAEIEKIYDIAVNG.SD
  583-  642 (86.81/66.10)	SAATILC..GASLARG.WNIqehTVLFITRLLSPP.VSANYSGTESHLIGYARFLNVLLIGvSS
  885-  923 (41.75/21.58)	SLATIVSyfSAEVTRGiWKL...ASMNGTDWPSP...AANLATVE...................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12153 with Med33 domain of Kingdom Viridiplantae
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