<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12136

Description probable mediator of RNA polymerase II transcription subunit 26c isoform X2
SequenceMDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPQCRNCGDGHRLRPNGHQVAKQNSPSPSPERQPQRRAAAAANSPVTPQSLENDDGGEELDPYGGLFDDEQKKILDIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKPTPAPSVSTPASASQNRQRQSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW
Length352
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.05
Grand average of hydropathy-0.990
Instability index62.56
Isoelectric point6.81
Molecular weight39138.89
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12136
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.98|      36|      37|     220|     255|       1
---------------------------------------------------------------------------
  220-  255 (63.82/31.92)	QKTT..QNGHHHQIPDFAYS.PNPHNGSSGSDRNNS.EAE
  256-  295 (44.89/20.48)	HKPKviPRSEPRPKPTPAPSvSTPASASQNRQRQSSfDAE
  317-  342 (33.28/13.47)	QRTI..QVMDINELP....K.SKPKNAFFGKNK.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.14|      19|      44|      50|      68|       5
---------------------------------------------------------------------------
   50-   68 (39.09/22.24)	ATAAP..PQCRNCGD.GHRLRP
   94-  115 (26.05/12.59)	AANSPvtPQSLENDDgGEELDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12136 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APPQCRNCGDGHRLRPNGHQVAKQNSPSPSPERQPQRRAAAAANSPVTPQSLENDDGGEELDPYGG
2) NPQGGSNTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKPTPAPSVSTPASASQNRQRQSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW
53
203
118
352










Molecular Recognition Features






MoRF SequenceStartStop




1) KPKNAFFGKNKG
2) SQGRHW
332
347
343
352