<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12130

Description mediator of RNA polymerase II transcription subunit 25 isoform X2
SequenceMSELQLIVVVESTSAMGPYWETVLMDYLDKMIRSFGVNDSTGQKSLAPNVEFALITYNTHGCYSGCLVQRTGWTRDPDVFFLWLSSIPFNGGGFNDAAIAEGLSEALMMFPNSQSGGPNQQNVDMHKHCILIAASNPYPLQTPVYVPRPQNLEQSETIDSDSGNRLYDAEAVAKAFPQFSISLSVICPKQLPKIKAIYNAGKRSNRAADPPLEAKTPHFLILISEGFREARIALSRSGITSLPSNQSPVKVDTVSVMPVTGAPPTSMPSVNGSIANRQPVPAGNVAPPATVKVEQVPVTSMVSGPSFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIITNNENTQDTKPTVSMLQPLRPVNPTQANVSILNNLSQARQVMSSAALSGGTSKGIPSMGQTPVAMHMSNMISTGMTSSVPAAQNVFSSGQSGITSITSSGPLSVPAQVGQNPGLGSLTSNTSNLSSNSNIGISQPLGNLQGAVSIGQQASGMSQGNLSGPQMVQGGVPMSQNAMSGLGPSVVSSGNATMIPIPGMSQQQSGMQSIVNNTAVNKPLSQQTSGGMQSAQSKYVKVWEGGLSGQRQGQPVFITKLEGYRNSSASETLAANWPSVMQIVRLISQDHMNNKQYVGKADFLVFRAMNLHGFLVQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDMVVFKPQLSTQQQQQMQQQQQHQQMQSQQQHLPQLQQQQPLPHMQQQQLPQMQQQQQQLQQQQQLPQMQQQQQQLPQLQQQQQLPQVQQQQQLSQLQQQQHPQIQQQQQLPQLQQQIPQLQQQQQLPQLQQLQPQQQQMVGAGISQAYVQGPGRSQLVSQGQVSSQGTTNIGGGGFMS
Length861
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.04
Grand average of hydropathy-0.395
Instability index67.33
Isoelectric point9.03
Molecular weight92810.85
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12130
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.00|      32|      32|     709|     740|       1
---------------------------------------------------------------------------
  429-  453 (35.64/ 7.00)	QSGITSITSSGPLS......VPA.QVGQN.PGL
  712-  740 (58.00/16.48)	QQHLPQLQQQQPLPHMQQQQLPQMQQQQQ....
  769-  796 (41.75/ 9.59)	.....QVQQQQQLSQLQQQQHPQIQQQQQlPQL
  797-  823 (52.61/14.20)	QQQIPQLQQQQQLP.....QLQQLQPQQQ.QMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.69|      17|      18|     525|     542|       2
---------------------------------------------------------------------------
  525-  542 (29.47/19.52)	NATMIPIPgMSQQQS.GMQ
  546-  563 (26.22/11.39)	NNTAVNKP.LSQQTSgGMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.18|      16|      49|     690|     705|       4
---------------------------------------------------------------------------
  690-  705 (33.82/11.27)	QLSTQQQ.QQMQQQQQH
  741-  757 (29.36/ 8.77)	QLQQQQQlPQMQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     138.12|      23|      23|     242|     264|       5
---------------------------------------------------------------------------
  118-  137 (26.70/11.16)	.P.......NQQ.NVDMHKHCIL.IA..AS.NP
  242-  264 (40.99/21.49)	LPS......NQS.PVKVDTVSVM.PV..TGAPP
  267-  288 (21.47/ 7.38)	MPSvngsiaNRQ.PVPAGNVA..........PP
  307-  332 (23.35/ 8.74)	FPH......NSSvPRATSTSQGV.PSlqTSSPS
  341-  363 (25.60/10.36)	NNE......NTQ.DTK.PTVSMLqPL..RPVNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.59|      22|      22|     374|     395|       6
---------------------------------------------------------------------------
  374-  393 (27.45/13.01)	...LSQARQVMS.S...AALSGGTSKG
  394-  417 (30.34/15.26)	IPsMGQTPVAMHmS...NMISTGMTSS
  506-  524 (18.79/ 6.27)	VP.MSQ..NAMS.GlgpSVVSSG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.81|      29|      31|      12|      42|       7
---------------------------------------------------------------------------
   14-   42 (52.79/44.11)	SAMGPYWETVLMDYLDKMIRSFGVNDSTG
   44-   72 (52.02/35.82)	KSLAPNVEFALITYNTHGCYSGCLVQRTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.86|      34|      38|     149|     184|       8
---------------------------------------------------------------------------
  149-  184 (49.44/42.18)	PQNLEQSETIdSDSG...NRLYDAEAVAKAfPQFSISLS
  188-  224 (55.42/36.48)	PKQLPKIKAI.YNAGkrsNRAADPPLEAKT.PHFLILIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.87|      22|      48|     616|     637|      10
---------------------------------------------------------------------------
  616-  637 (38.71/26.53)	LISQD...HMNNKQY..VG...KADFLVFR
  659-  688 (22.17/11.77)	LPSQTlllSVSDKAFrlIGmlfPGDMVVFK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12130 with Med25 domain of Kingdom Viridiplantae
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