<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12126

Description ATP-dependent DNA helicase Q-like 4A
SequenceMCCLVATQMRQGEVNSVRVDKENNRDWLRHANAHENFSSQGKFLSSNFLFSVPPKKPRHQEPDPGTAGFVFQRSENIQVSQRVQFDKAWDALSSLQNSSRNYVQPGKNVNVNWQSHENTRTAPIHGGYQNDNRMCPDVTDIPVSKNTSWGLDGSLNNHNKCTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKXSISKLPPVTPNAXKDEFARQGGDVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNNQIQQLEKYIQSSNLNEERQKSHFSASTAPSTSYVYETPQQTGACNGSKQYDTQVYMGNGTCGSTFQSLPSFSVDNYSTSSGPLEREAFIPKIVEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCHGITLVISPLVSLIQDQIMHLLQLNIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVASNLQECGHKCAFYHGTMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMISQGAIEQSPMTSGYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHGAGKHLAKGEASRILHRLVVEDILVEEVKKSDYGSVSSILKVNELKVCNLFAGHRIILRFPSSVKALKPGKSDVTPAKGSLTSGKPNVIPTNAPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQMSKKVPRTKEELLDINGIGKAKVSKYGDEILETIENTINEYYKLDKASSGSKDSADSAKRRRESNGDPYANAEDDDALTNSTGRSKKRTIKRQNKKAVIYDSAEEDYFSGCHDEDLDFDLIEIDALDQVTCKNASGRVLPQWTTS
Length1167
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-0.520
Instability index46.06
Isoelectric point6.60
Molecular weight130841.13
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12126
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.35|      55|     404|     573|     629|       1
---------------------------------------------------------------------------
  573-  629 (92.22/74.65)	PNTPV.LALTA...TATASVKEDVVQALGlvNCVVFRQSFNRPNLWY..SVVPKTKKCLEDID
  978- 1038 (78.13/56.53)	PQTEVdLNLSAklyTALRMLRTTLVKEAG..DSVFAYHIFGNATLQQmsKKVPRTKEELLDIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.05|      36|     404|     498|     536|       3
---------------------------------------------------------------------------
  295-  312 (21.04/ 6.90)	....................EKYIQSSNLNEERQKSHF
  501-  536 (64.00/40.86)	LRELNSDYCK..YKLLYVTPEKVVKSDNLLRHLENLHF
  632-  658 (37.01/15.17)	IRENHFDECGiiYCLSRMDCEKV..ASNL.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.69|      14|      19|     745|     759|       5
---------------------------------------------------------------------------
  745-  759 (22.18/18.75)	SDYIRvKHMISQGAI
  766-  779 (27.51/18.21)	SGYNR.SNMINPGSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.83|      28|     282|     392|     427|       6
---------------------------------------------------------------------------
  392-  427 (41.29/43.99)	DKRWSshdfpwtKElEVN...NKKVFGNHSFRPNQREVI
  681-  711 (46.54/26.64)	QKQWS.......KD.EINiicATVAFGMGINKPDVRFVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.66|      20|      60|     843|     862|       8
---------------------------------------------------------------------------
  843-  862 (32.08/17.69)	LVELVKLTGQRFSSSHILEV
  867-  882 (17.69/ 6.90)	FSQMVKKNRHETVSLH....
  906-  924 (26.90/13.80)	LVEEVK.KSDYGSVSSILKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.29|      35|     220|     223|     260|       9
---------------------------------------------------------------------------
  223-  260 (58.10/43.90)	GGDVLPPDL.CLDCiHGYKLGLCP......EAAIHLQELkdNLIA
  444-  485 (53.19/30.42)	GGKSLTYQLpALVC.HGITLVISPlvsliqDQIMHLLQL..NIPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.74|      13|      19|     323|     338|      14
---------------------------------------------------------------------------
  323-  338 (19.67/17.54)	VYetpQQTGACNGSKQ
  343-  355 (26.07/13.74)	VY...MGNGTCGSTFQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12126 with Med34 domain of Kingdom Viridiplantae
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