<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12111

Description U-box domain-containing protein 33 isoform X1
SequenceMAVVSPMPATAPQINRTSKLRDVGVPGIMTSRREIVSEPSPSMVNDTLYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPMMGAKFPASALREQEVQDYHERERQKIPEIMDAYLYICQRMGVRAGKVFIEMDCVEKGIVELIHQYGIQRLVMGAASDKNYSRRMISLKSKKAIYVSEQAPASCHIQFVCNGYLIHTRDCRLDRRNVEVGSPSVLQIANSEVGHSPNMGSPSSVAGQNRWRKPTNPGQELFRRVRTINGALRKSIESVSSLEGYLIPKRKIGKGASSDEFDEQSRGSPSVVSMYFESCLGDAELIPDLINNGSENVLGLSLNNFSLDNKDLHSPSPSVLDEGMDDALYGQLEHAMAEAWNARQDAYHETVRRVKAEKEAKDAIRKAKATENLFQEELKLRKEQEEEVQKANEELDNMKSQINKVNEELQLALDQKLSLENQIASTELVVKELEQKNISADELSQKYKDELDELQMQLDNALGEAEELRREQGESSSMQRLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSAQGPVEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDANLVSKLSDFGICRILSCQEGSSSSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGVILLRLITGKPALGITKEVQYALHSRKLKSILDPLAGDWPVMLAEELVRLALRCCEMNRKNRPDLHPDVWRILEPMRASCGPTQLGSQGKCQPPPYFICPISLEVMQDPQVAADGFTYEAEAIREWLKSGRHTSPRTNSKLAHHNLIPNHSLRHAIQDWLQTH
Length891
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.06
Grand average of hydropathy-0.426
Instability index48.14
Isoelectric point6.24
Molecular weight99887.78
Publications
PubMed=25384727

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12111
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.86|      15|      64|     226|     242|       1
---------------------------------------------------------------------------
  218-  234 (23.24/14.57)	GSPSvlQIANSEVGHSP
  237-  251 (29.62/12.54)	GSPS..SVAGQNRWRKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.78|      29|      30|     739|     767|       2
---------------------------------------------------------------------------
  739-  767 (50.12/35.99)	PALGITKEVQ...YALH....SRKLKSILDP.LAGD.W
  768-  798 (32.49/20.52)	PVMLAEELVR...LALRccemNRKNRPDLHP....DvW
  811-  842 (31.17/19.36)	TQLGSQGKCQpppYFIC....PISLEVMQDPqVAAD..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.28|      10|      16|     412|     421|       3
---------------------------------------------------------------------------
  412-  421 (16.58/ 8.44)	QEELKLRKEQ
  429-  438 (17.70/ 9.42)	NEELDNMKSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     343.58|     108|     181|     262|     371|       4
---------------------------------------------------------------------------
  262-  349 (120.26/73.54)	.........................................VRT...I.NGALR..KSIES..................................................VSSLEgyLIPKRKIGKGASSDEFDEQSR.GSPSVVSMYFESCLGDAELIPDLINNGS.ENVLGLSLNNFSLDN.KDL
  350-  532 (115.58/64.67)	HSPSPSVLDEGMDDALYGQLEHamaeawnarqdayhetvrrVKAekeA.KDAIRkaKATENlfqeelklrkeqeeevqkaneeldnmksqinkvneelqlaldqklslenqIASTE..LVVKELEQKNISADELSQKYK.DELDELQMQLDNALGEAEELRREQGESS.SMQRLQPFSEFSFSEiKEA
  536-  618 (107.73/59.80)	FNPSLKIGQGGYGSIFKGILRH..........................tEVAIK...........................................................MLS....PDSAQGPVEFQQEVEILSRlRHPNLVTL.IGSCPESWTLVYEYLPNGSlEDRL...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.45|      44|      78|       3|      50|       8
---------------------------------------------------------------------------
    3-   50 (69.44/50.03)	VVSPMPATAPQINRTSKLRDVGVPGIMTSRREIVsepsPSMVNDTLYV
   82-  125 (78.02/46.89)	VPAPMIPMMGAKFPASALREQEVQDYHERERQKI....PEIMDAYLYI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12111 with Med32 domain of Kingdom Viridiplantae
Unable to open file!