<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12108

Description U-box domain-containing protein 33 isoform X2
SequenceMDAYLYICQRMGVRAGKVFIEMDCVEKGIVELIHQYGIQRLVMGAASDKNYSRRMISLKSKKAIYVSEQAPASCHIQFVCNGYLIHTRDCRLDRRNVEVGSPSVLQIANSEVGHSPNMGSPSSVAGQNRWRKPTNPGQELFRRVRTINGALRKSIESVSSLEGYLIPKRKIGKGASSDEFDEQSRGSPSVVSMYFESCLGDAELIPDLINNGSENVLGLSLNNFSLDNKDLHSPSPSVLDEGMDDALYGQLEHAMAEAWNARQDAYHETVRRVKAEKEAKDAIRKAKATENLFQEELKLRKEQEEEVQKANEELDNMKSQINKVNEELQLALDQKLSLENQIASTELVVKELEQKNISADELSQKYKDELDELQMQLDNALGEAEELRREQGESSSMQRLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSAQGPVEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDANLVSKLSDFGICRILSCQEGSSSSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGVILLRLITGKPALGITKEVQYALHSRKLKSILDPLAGDWPVMLAEELVRLALRCCEMNRKNRPDLHPDVWRILEPMRASCGPTQLGSQGKCQPPPYFICPISLEVMQDPQVAADGFTYEAEAIREWLKSGRHTSPRTNSKLAHHNLIPNHSLRHAIQDWLQTH
Length773
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.06
Grand average of hydropathy-0.458
Instability index45.73
Isoelectric point5.96
Molecular weight86791.61
Publications
PubMed=25384727

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12108
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.86|      15|      64|     108|     124|       1
---------------------------------------------------------------------------
  100-  116 (23.24/18.43)	GSPSvlQIANSEVGHSP
  119-  133 (29.62/15.92)	GSPS..SVAGQNRWRKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.78|      29|      30|     621|     649|       2
---------------------------------------------------------------------------
  621-  649 (50.12/31.39)	PALGITKEVQ...YALH....SRKLKSILDP.LAGD.W
  650-  680 (32.49/17.91)	PVMLAEELVR...LALRccemNRKNRPDLHP....DvW
  693-  724 (31.17/16.90)	TQLGSQGKCQpppYFIC....PISLEVMQDPqVAAD..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     258.06|      76|     131|     216|     299|       3
---------------------------------------------------------------------------
  216-  299 (115.00/80.44)	VLGLSLNNFSLDNkDLHSPSPSVLDE...GMDDALYGQLEHAMAEAWNARQD.AYHETVRRVK..AE...KEAKDAirkakaTENlFQEELKL
  304-  351 (53.49/24.41)	EEEVQKANEELDN..MKSQINKVNEElqlALDQKL..SLENQIAST..........ELVV..........KE.....................
  352-  424 (89.57/48.01)	...LEQKNISAD..EL...SQKYKDE....LDE.LQMQLDNALGEAEELRREqGESSSMQRLQpfSEfsfSEIKEA......TRN.FNPSLKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.73|      25|     290|     137|     213|       7
---------------------------------------------------------------------------
  188-  213 (40.28/93.74)	PSVVSMyFESCLGDAELIPDLINNGS
  471-  495 (47.45/ 9.20)	PNLVTL.IGSCPESWTLVYEYLPNGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12108 with Med32 domain of Kingdom Viridiplantae
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