<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12104

Description pre-mRNA-processing protein 40A isoform X2
SequenceMSNNPQFPGLQPLRPPITGSVDPPRNYAPPMPVQFRPVVPAQQPQQFISMPSQHYQHHQHQPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNLHIPSESMMPQPDSQAPNGYTPGVGGPGMTLSSSYTFAAPTYGQVQTNFNSTGQFQPVPQVHALTGSSSQSITTGTTLQSNGGGQPLVPTVMPSATIVQPQLAKNGSTDWIEHTTSTGRTFYYNKKTKVSSWEKPFELMTPIERVDESTNWKEYISPDGRKYFYNKVTKESKWLIPEELKLAREQVEKAIASGPHSEALLNSHIQPSPASSVAEATDNISVSSQGEPSSPVSVAPVVTTSTSTLQPEMPSGPSTSPSATPITGTKVDELEAPVNTVTPSDTSMGGDKAVDTDVSTAITPTNDTNNDSNQDALGSADGVPAEEKEDGKTDSIGERSNHVAAETKAVEPETLVFANKMEAKDAFKALLDSANVGSDWTWDRAMRLIINDKRYGALKTLGERKQAFNEYLNHRKKHEAEEKRMKQKKAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELVNKERARVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSCLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYIAVASNTSGSTPKDLYEDVAEELDKQYHEEKSRIKDAMKLAKITLFSTWTFEDFKSALSKDIGTSPISDFNLKLVFEELLERVKEKEEKEAKKRKRLADDFFHLLYSIKDITVSSNWEDSIPLVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERIRKEERMKKEKDREERERRKGKQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEMDKEKTKKSHGHGSDRKKSKRRASGHESDEGRHKRHKRDHRREGDHGDLEDGEFGDGVDR
Length1016
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.06
Grand average of hydropathy-1.063
Instability index57.97
Isoelectric point6.17
Molecular weight115455.28
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12104
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     408.57|      64|      66|     445|     508|       1
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  377-  427 (42.54/20.71)	.GTKV......DEL...EAPVNT.VTPS.......................................D....T..S.MGGDKAV....DT..DVSTAItptndtnND.SNQDALG
  445-  508 (98.48/57.84)	IGERS......NHV...AAETKA.VEPETL...........VFANKMEAK......DA...FKALL.D....SA.N.VGSDWTW....DR..AMRLII.......ND.KRYGALK
  510-  576 (75.78/42.78)	LGERK...qafNEY...LNHRKK.HEAEE...............KRMKQK......KAredFKKMLeE....ST.D.LTSSTRW....SK..AVSIFE.......ND.ERFKAVE
  579-  644 (52.28/27.17)	RDRRDmfesflEEL...VNKERArVQEERK.............RNIMEYK.......K...F...L.E....SC.DfIKASTQWrkvqDRleA.............D.ERCSCLE
  652-  717 (62.22/33.77)	FQDYL......RDLekeEEEQKK.IQKEEL...........RKTER.KNR......DE...FRKLM.EehiaSG.I.LTAKTHW.....R..DYYTKV.......KDlHAY....
  720-  769 (23.07/ 7.78)	.............V...ASNTSG.STPKDLyedvaeeldkqYHEEKSRIK......DA...MK..L.A....KI.T.LFSTWTF....E..........................
  794-  851 (54.21/28.45)	...........EEL...LERVK...EKEEK.................EAKkrkrlaDD...FFHLL.Y....SIkD.ITVSSNW....ED..SIPLVE.......DS.QEFRSIG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     190.12|      38|      38|     221|     258|       2
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  144-  177 (34.74/18.30)	.......TLSSSYTFaaptYGQVQTNFNS.TGQFQPVPQVHA
  178-  205 (36.96/19.96)	LTGSSSQSITTGTTL....QSNGGGQ......P..LVPTV..
  221-  258 (69.80/44.54)	STDWIEHTTSTGRTF....YYNKKTKVSSWEKPFELMTPIER
  262-  293 (48.62/28.69)	STNWKEYISPDGRKY....FYNKVTKESKWLIPEEL......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     132.44|      21|      22|      24|      44|       3
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   24-   44 (44.89/25.09)	PRNYAPPM..PVQFRPV..VP.........A.......QQP
   52-   76 (28.90/13.52)	SQHYQHH.....QHQPV..GP.........GgvpmigvGMP
   77-   97 (33.37/16.75)	PQNQQPQFsqPIQQLP....P.........R.......PSP
  101-  131 (25.28/10.89)	PPSQAIPM..PVA.RPNlhIPsesmmpqpdS.......QAP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.49|      39|      41|     934|     972|       4
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  885-  924 (55.88/26.37)	KEKDR..EERERRKG.KQRREKDggR..ERGKDEAHKKD.KADSDS
  934-  972 (70.56/35.21)	KENKR..SEDDSRKQRKQRHSPE..H..EMDKEKTKKSH.GHGSDR
  973- 1016 (52.05/24.07)	KKSKRraSGHESDEGRHKRHKRD..HrrEGDHGDLEDGEfGDGVDR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.99|      18|      19|     338|     355|       5
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  319-  334 (20.42/ 8.17)	..Q.PSPASSVAEATDNIS
  338-  355 (31.64/16.99)	QGE.PSSPVSVAPVVTTST
  359-  376 (27.93/14.08)	QPEmPSGP.STSPSATPIT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12104 with Med35 domain of Kingdom Viridiplantae
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