<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12100

Description mediator of RNA polymerase II transcription subunit 33B isoform X1
SequenceMEAMVWEGVMELTKWAQEKKTDPLLWSIQVSAALNSAGVSLPSVDLAHRLVSYICFDNHVPLAWKLLEKAMAVRILPPLLALSLLSTRVLPHRHLHPAAYALYIDLLNRHAFSLSSNIHFPNYPKVMASIHHSLRFSQLYSSHDPHPGLVLVHLLFTLVSQLLEASLDDEGLLQHKPRWIARFPDSDVDNMLIDASPNHTKDTLHRKNTAMAIETISLFLHHKVTSRILSLVQRNMPAHWGPFVHQLQRLAANSTVLRSLKQVTPDSLLPLNFNSAPGIKGLSSEWKSTPKLELNAVMAGSCAVQSCNDNWSSLWLPIDLILEDAMDGNHVAEASAVEVLTGLVKALQAVNGAAWHCAFLGLWIAALRLVQRERDPSEGPVPRLDTCLCMLLCITTLVVTNLIEEEEGELIEEAERSPTNQRMDKQALGERRGELVISLQLLGDYEDLLTPPQSVIWGANQAAAKATLFVAGHSGYLEYTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWPGYVSAPFNQLPHSIPNHLPSWSSLMKGSPLTPQLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIVKMLSPPVPPKYSGTESYLINHAPLLXVLLIGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFNHPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLASFGKSPRDRVSCRRFSKMITFSLEPLFMESFPKLNIWYRQHRECIASTCSTLAPGGPVSQIVEALLSMICKKINRSAQSLTPTTSGSSNSSCSSLDDALMKLKVPAWDILEATPFVLYAALTACAHGRLSPRELATGLKDLADFLPATLGTIISYLSAEVTRGIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIADGNAPPALPLPLAAFLSLTITYKLDKTYERFVVLAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFTSTLGLGSACIYNNGGVGTLLGHGFGSHFYRGITPVAPGFLYLRVHRSIRDVMFLTEEIVSLLMLSVRDIANSGLPKGEVEKLKKTKYGMRYGQVSLAASMTRVKHAALIGASFLWISGGSGLVQSLIIETLPSWFLSAQGLEQEGAEPGVVVAMLRGYALACFAVLGGTFAWGIDSSSPASKRRPKVLGIHLDFLANALDGKVSLRCDCATWRAYVSGVMSLMVSCTPQWIQELEVGILKRMSNGLRQMDEEDLALRLLEIRGTSVMGEVAEMICQSR
Length1316
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy0.215
Instability index44.44
Isoelectric point6.99
Molecular weight143663.30
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12100
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.06|      69|     137|      41|     117|       1
---------------------------------------------------------------------------
   41-  117 (97.13/70.11)	LPSVDLAHRLVSyiCFDNHVPLAWKLLEKAMAVRILpPLLALSLLSTRVLP..HRHLhPAAYALYIDLLNRhafsLSSN
  183-  253 (116.93/60.52)	FPDSDVDNMLID..ASPNHTKDTLHRKNTAMAIETI.SLFLHHKVTSRILSlvQRNM.PAHWGPFVHQLQR....LAAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.53|      23|     635|     339|     375|       2
---------------------------------------------------------------------------
  339-  361 (40.32/13.12)	VLTGLVKALQAV.NGAAWHC.AFLG
  977-  999 (32.40/ 7.84)	VLAG..PSLIALsSGCPWPCmPIVG
 1158- 1178 (29.82/20.16)	..SGLVQSLIIE.TLPSWFL.SAQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.74|      45|     634|     118|     182|      11
---------------------------------------------------------------------------
  118-  164 (72.01/43.30)	IHFPnYPKVMASIHHSL.RFSQLYSSHDPHPGLVLVhLLFTLVSQLLE
  518-  563 (74.73/39.95)	VSAP.FNQLPHSIPNHLpSWSSLMKGSPLTPQLVNV.LVATPASSLAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12100 with Med33 domain of Kingdom Viridiplantae
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