<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12099

Description mediator of RNA polymerase II transcription subunit 33B isoform X2
SequenceMEAMVWEGVMELTKWAQEKKTDPLLWSIQVSAALNSAGVSLPSVDLAHRLVSYICFDNHVPLAWKLLEKAMAVRILPPLLALSLLSTRVLPHRHLHPAAYALYIDLLNRHAFSLSSNIHFPNYPKVMASIHHSLRFSQLYSSHDPHPGLVLVHLLFTLVSQLLEASLDDEGLLQHKPRWIARFPDSDVDNMLIDASPNHTKDTLHRKNTAMAIETISLFLHHKVTSRILSLVQRNMPAHWGPFVHQLQRLAANSTVLRSLKQVTPDSLLPLNFNSAPGIKGLSSEWKSTPKLELNAVMAGSCAVQSCNDNWSSLWLPIDLILEDAMDGNHVAEASAVEVLTGLVKALQAVNGAAWHCAFLGLWIAALRLVQRERDPSEGPVPRLDTCLCMLLCITTLVVTNLIEEEEGELIEEAERSPTNQRMDKQALGERRGELVISLQLLGDYEDLLTPPQSVIWGANQAAAKATLFVAGHSGYLEYTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWPGYVSAPFNQLPHSIPNHLPSWSSLMKGSPLTPQLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIVKMLSPPVPPKYSGTESYLINHAPLLXVLLIGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFNHPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLASFGKSPRDRVSCRRFSKMITFSLEPLFMESFPKLNIWYRQHRECIASTCSTLAPGGPVSQIVEALLSMICKKINRSAQSLTPTTSGSSNSSCSSLDDALMKLKVPAWDILEATPFVLYAALTACAHGRLSPRELATGLKDLADFLPATLGTIISYLSAEVTRGIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPPALPLPLAAFLSLTITYKLDKTYERFVVLAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFTSTLGLGSACIYNNGGVGTLLGHGFGSHFYRGITPVAPGFLYLRVHRSIRDVMFLTEEIVSLLMLSVRDIANSGLPKGEVEKLKKTKYGMRYGQVSLAASMTRVKHAALIGASFLWISGGSGLVQSLIIETLPSWFLSAQGLEQEGAEPGVVVAMLRGYALACFAVLGGTFAWGIDSSSPASKRRPKVLGIHLDFLANALDGKVSLRCDCATWRAYVSGVMSLMVSCTPQWIQELEVGILKRMSNGLRQMDEEDLALRLLEIRGTSVMGEVAEMICQSR
Length1315
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy0.214
Instability index44.53
Isoelectric point6.99
Molecular weight143592.22
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12099
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.20|      15|     191|     763|     777|       1
---------------------------------------------------------------------------
  763-  777 (30.75/18.14)	PLFMESFPKLNIWYR
  952-  966 (26.45/14.58)	PLPLAAFLSLTITYK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.53|      23|     634|     339|     375|       2
---------------------------------------------------------------------------
  339-  361 (40.32/13.66)	VLTGLVKALQAV.NGAAWHC.AFLG
  976-  998 (32.40/ 8.20)	VLAG..PSLIALsSGCPWPCmPIVG
 1157- 1177 (29.82/20.92)	..SGLVQSLIIE.TLPSWFL.SAQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.50|      81|     636|      54|     186|       4
---------------------------------------------------------------------------
   57-  149 (118.75/154.34)	DNHVPLAWKLLEKAMAVRILpPLLALSLLSTRVLP..HRHLhPAAYALYIDLLNRhafsLSSNihfpnyPKVMASIHHSLRFSQLYSSHDPHPGL
  197-  279 (135.76/66.75)	PNHTKDTLHRKNTAMAIETI.SLFLHHKVTSRILSlvQRNM.PAHWGPFVHQLQR....LAAN......STVLRSLKQVTPDSLLPLNFNSAPGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.16|      18|     636|      23|      44|       7
---------------------------------------------------------------------------
   25-   42 (31.46/20.66)	LWSIQVSAALNSAGVSLP
  513-  530 (37.71/12.99)	FWPGYVSAPFNQLPHSIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12099 with Med33 domain of Kingdom Viridiplantae
Unable to open file!