<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12086

Description pre-mRNA-processing protein 40A
SequenceMANNSQPSNMQFRPVIQAQQGQQFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQQMQQLTPRPMQPGHLAPSSQPIPMPYVQTNRPMSSIPPHSQTVPPLSNHMPGLPVSGAPPHSSYSFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWPSSASQSVAPSTSVQPSGLQSSGATLTDAVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAVGSSIATSTAANAASLNPSLTSNGPASSPSSVIPIASTDSQQLVSGLLGASVSHSTVTSSTTSVEPSSAGSAVPVVIAGSSGLPENSPQLSKMPPIVENQASQDFASANGSSPQNIEEAKKALAEVGKNNVIPSEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAIRMFENDERYNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGFLTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFEDVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDAACQTISDINLKLIFEELLDRAKEKEEKEVKKRQRLADEFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKFKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDQDMADVHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKREHWDVSRKSGGHEELEDGELGDDVEN
Length997
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-1.136
Instability index56.12
Isoelectric point6.19
Molecular weight114276.33
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12086
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.55|      37|      40|     198|     235|       1
---------------------------------------------------------------------------
  198-  234 (74.41/41.37)	WQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERAD
  239-  275 (72.14/36.20)	WKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      79.43|      14|      14|     847|     860|       2
---------------------------------------------------------------------------
  847-  860 (21.77/10.19)	ERKREEEKFKKEKE
  863-  876 (21.07/ 9.62)	EKRKEKEKKEKDRE
  878-  891 (19.35/ 8.21)	EKDKSKERHRKDET
  892-  905 (17.25/ 6.50)	DSDQDMADVHGYKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     474.82|      64|      66|     459|     522|       3
---------------------------------------------------------------------------
  414-  455 (25.89/10.64)	....................AL..AEVGknnvipsE.EKTNDDETLVYANKLE..................AK............NAF.KALLES..V
  459-  522 (104.94/67.74)	SDWTWEQAMREIIND.KRYNAL..KTLG.......E.RKQAFNEYLGQRKKLEAEERRMKQK.R.......AR............EEF.TKMLEE..C
  527-  590 (97.71/62.52)	SSMRWSKAIRMFEND.ERYNAV..ERPR.......D.REDLFESYMVELERKEKENAAEEHR.R.......NI............AEY.RKFLES..C
  595-  664 (86.04/54.09)	VNSHWRKIQDRLEDD.DRYLRL..EKI........D.RLLVFQDYIRDLEKEEEEQRRIQKD.RvrrgerkNR............DAF.RKLLEE..H
  674-  753 (58.04/33.86)	TQWR.EYCLK..VRDlPQYQAVasNTLG.......StPKDLFEDVAEDLEKQYHEDKTLIKD.T.......IKsgkiivvttsvfEEFkAAVLEDaaC
  757-  797 (52.58/29.92)	SDINL.................................KLIFEELL.DRAK.EKEEKEVKKRqR.......LA............DEF.TNLLYT..F
  802-  846 (49.62/27.78)	TSSKWEDCKSLFEET.QEYRSI..GDES.......Y.SREIFEEYITYLKE.KAKEK.........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.85|      29|      29|     906|     934|       4
---------------------------------------------------------------------------
  906-  934 (48.90/29.37)	EKKKEK..DKERK...HRKRHQSSI.DDVDSEKED
  937-  964 (36.67/19.91)	ESKKSRrhGSERK...KSRKHANS....PESDNEN
  969-  996 (24.28/10.34)	HKREHW..DVSRKsggHEELEDGELgDDVE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     177.22|      29|      29|      67|      95|       5
---------------------------------------------------------------------------
    1-   26 (25.41/10.04)	.......MA.NNSQPSNMqfrPVIQAQ.....QGQQFV....P
   31-   64 (36.48/17.44)	QFGPaGHAI.PSSN.VGM...PVIQGQqlqysQQMQQL....T
   67-   95 (56.40/30.74)	PMQP.GHLA.PSSQPIPM...PYVQTN.....RPMSSI....P
  116-  143 (25.53/10.13)	..AP.PHSS.YSFTP......SYGQQH.....DNANALaqyqH
  144-  170 (33.41/15.39)	P..P.QMLApPGGQPWPS...SASQSV.....APSTSV.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.82|      12|      25|     286|     297|       6
---------------------------------------------------------------------------
  286-  297 (20.43/12.67)	TSDTPNAVGSSI
  313-  324 (21.47/13.76)	TSNGPASSPSSV
  354-  365 (19.92/12.13)	TSVEPSSAGSAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12086 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSTVTSSTTSVEPSSAGSAVPVVIAGSSGLPENSPQLSKMPPIVENQASQDFASANGSSPQNIEEAKKALAEVGKNNVIPSEEKTNDDETLV
2) KREEEKFKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDQDMADVHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKREHWDVSRKSGGHEELEDGELGDDVEN
3) MANNSQPSNMQFRPVIQAQQGQQFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQQMQQLTPRPMQPGHLAPSSQPIPMPYVQTNRPMSSIPPHSQTVPPLSNHMPGLPVSGAPPHSSYSFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWPSSASQSVAPSTSVQPSGLQSSGATLTDAVTNATNQQSLSDWQEHTSADGRRYYYNKRT
4) SIPEELQLAREQAQKAANQGMQSETSDTPNAVGSSIATSTAANAASLNPSLTSNGPASSPSSVIPIA
346
849
1
262
437
997
215
328










Molecular Recognition Features






MoRF SequenceStartStop




1) DVHGY
2) ENRHRRHKREHWDVSRKSGGHEELED
3) KSRKH
899
963
950
903
988
954