<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12073

Description mediator of RNA polymerase II transcription subunit 33A isoform X4
SequenceMESALEWNDEVREGVLKRLKLWQQCSKKPAAALVTELVEHLNTLGIALPSPELGELLVSQICFDNNHPWMWKFTHHALSSRLLFPLQILSLLASNAIPHRHSHPHSFALFLPLLSQYAFSFQSTPSLSCNRKIVSSVDSALRISETYKVRDLEIGHVFVLFFYEIVISLLDCVLIDWGFQVTFSEKSSLVAAGKGEDCMDIDRNVTQNFEKSEYREQIRKRNSFTALEVLERLTESRKATILLQSVLLNMPEKFNCLQQRLQFLESLELASSELKLVNQVLTKVSANMRGVSHFDYSLSKHRLVGTLINMGSCKIPLKCNYRFCQSPCWVPFDIYMENAMDSRQIPTKSAIDVLTEGIKTLQMLNQASWQETFLALWLSALRLVQRERDPPEGPIPHLVARLCVLLCIVPLAIANVLRDASEHNLSSVQVSMESEYTHEMKSDDSVKRELMSSVQVLGHFSGLLCPPTLVIDAANQAARKAASFIYNSMNGKGESGTGIHANANTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVLSLSDSSPPEKSPWSMFMEGTPLNNTLINSLTMTPASSLAEIEKLYYIALNGSDVERPAAAKILCGASLGHGWYIQEHVIHHVIKLLASPLPPSHAGSRSLLVDNMPMLCAVLRGASSVDTVHILSLHGVVPTVAAALLPLCEAFGSIKPTSNSTGDESSTTYMAFSLAFLFLIRLWKFCRPPLDLCITELGVAVGGLEYILSLHNHRVMYSQDKRKSNPNLPESASVKPVYIDSFPKLRALYCQYKSCVASALSGISTGNSIHQTANMILSMIYQKITKVGISSSNSSSPTSSNACSSLINSGEDAFQRPMLPGWEVLEALPFVLESILTACAHGRISSRELTTGLRDLVDFLPASLAAIIDYFSSEVTRGVWKLVPMNGTDWPSPAALLPSIELEINAILTHVGVEVPNCSSGMEDATSKLKWRIKVDVDLCEITRLFIRSWIVCLVNPSHLVQLRFNSPFVDWKTRLEKLSSLFYIWFIDMTFPILFSSHTLYLKSPKLL
Length1043
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy0.100
Instability index42.47
Isoelectric point6.78
Molecular weight115916.88
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12073
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.47|      19|      25|     796|     814|       1
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  796-  814 (34.84/22.36)	GISTGNSIHQT.ANMILSMI
  822-  841 (29.63/17.83)	GISSSNSSSPTsSNACSSLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.68|      68|      77|     298|     368|       2
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  298-  368 (113.65/92.69)	LSKHRLVGTLINMGSCKIPlKCNYRFCQSPCWVPFDIymENAMDSRQIPTKSAIDVLTEGIKTLQMLNQAS
  378-  445 (116.02/82.36)	LSALRLVQRERDPPEGPIP.HLVARLCVLLCIVPLAI..ANVLRDASEHNLSSVQVSMESEYTHEMKSDDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     234.03|      78|     430|     448|     532|       3
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  448-  532 (122.05/97.56)	RELMSSVQVLGHFsgllCPPTL..VIDA.ANQAARKAASFIynSMNGKG.ESGTGIHANANTKAGGNLRHLIVEA..CiARNLMD.TSVYFW
  881-  965 (111.98/70.91)	RELTTGLRDLVDF....LPASLaaIIDYfSSEVTRGVWKLV..PMNGTDwPSPAALLPSIELEINAILTHVGVEVpnC.SSGMEDaTSKLKW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     347.17|     109|     127|     536|     651|       4
---------------------------------------------------------------------------
  536-  651 (181.46/132.42)	VST.SVLSLSDSSPPEKSPWSMFME..GT..PLNNTLIN.SLTMTPASSLAEiekLYYIALngSDVERPAAAkiLC....GASLGHGWYIQEHVIHHVI....KLLASPLPPSHAGSRSLLVDNMPMLCA
  659-  781 (165.71/103.62)	VDTvHILSLHGVVPTVAAALLPLCEafGSikPTSNSTGDeSSTTYMAFSLAF...LFLIRL..WKFCRPPLD..LCitelGVAVGGLEYILSLHNHRVMysqdKRKSNPNLPESASVKPVYIDSFPKLRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.69|      15|      25|     171|     185|       5
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  171-  185 (29.45/22.05)	DCVLIDWGFQVTF..SE
  197-  213 (23.24/15.73)	DCMDIDRNVTQNFekSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.20|      28|      31|      47|      76|       6
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   47-   76 (49.15/32.13)	ALPSPELGELLVSQICFDNNHPwmWKFTH.H
   77-  105 (44.05/21.81)	ALSSRLLFPLQILSLLASNAIP..HRHSHpH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.73|      21|      31|     227|     247|       7
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  227-  247 (31.19/26.46)	LEVLERLTESRKATILLQSVL
  261-  281 (31.54/26.86)	LQFLESLELASSELKLVNQVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12073 with Med33 domain of Kingdom Viridiplantae
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