<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12066

Description U-box domain-containing protein 33-like isoform X2
SequenceMKIKRNSSKANFAAKNAPPXCEIWFVYKGKHIWTREASETHCFVSSHPQPETTTXESLSCRSLQYGTTELLHSECLQSNSVRATRSTVPNIIIEAEATFSSKSSSCSSHCSPQHSEFDEETIDSQLIEAKAEANAAKDVELLECRRLEFIAIEAISKVNLFESAHAHEVKLRKEVEDAVRATIKEQRMLLEEKEKIASELERTTGSISFLGNCAHEINSKRDEAANELSLIQASFSSLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFSEEFPELAEFSLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSIEFQQEVRILGSLQHPNLVTLLGVCPEAWSFVYEFYPNGTLQDYLFRKGSLLPMTWSIRARCIFEIARALCFLHSSRPETIVHGGLTLETVLLDTALGCKICEFGFSRLVKEESLSLPSFHLITEPKGSFSYTDPELQRTGVLTPKSDVYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSTMVTQLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS
Length642
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy-0.269
Instability index50.89
Isoelectric point5.84
Molecular weight71824.85
Publications
PubMed=25384727

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12066
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.18|      27|      27|     197|     223|       1
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  197-  223 (45.74/32.82)	ASELERTTGSISFLGNCAHEINSKRDE
  225-  251 (44.44/31.68)	ANELSLIQASFSSLQHEKQEIRRQKME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.42|      11|      31|      87|      97|       2
---------------------------------------------------------------------------
   87-   97 (18.55/11.99)	TVPNIIIEAEA
  121-  131 (17.87/11.33)	TIDSQLIEAKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.89|      53|     364|      24|      80|       3
---------------------------------------------------------------------------
   24-   80 (85.86/59.36)	WFVyKGKHIWtrEASETHCFV.SSHPQP........ETTTxE.SLSCRSLQYGTTELLHSECLQSNS
  391-  454 (74.04/41.54)	WSI.RARCIF..EIARALCFLhSSRPETivhggltlETVLlDtALGCKICEFGFSRLVKEESLSLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.61|      32|      61|     271|     302|       8
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  271-  302 (55.47/32.55)	DGIIGFSEEFPELAEFSLSDLQN..ATCNFSESF
  333-  366 (53.14/30.90)	QGSIEFQQEVRILGSLQHPNLVTllGVCPEAWSF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12066 with Med32 domain of Kingdom Viridiplantae
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