<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12065

Description U-box domain-containing protein 33-like isoform X1
SequenceMAMDEYECDEKVHVAVGKSLKKGTTLIQWCFTHFSKAQICLLHVYQPSPMIPTLLGKLPASQASPEVVSAYRIEEREETKRLLEKYLSLCRAAKVKVSSVIGEADQVQTGIVDLVTVHNIRKLVIGAITPENCMKIKRNSSKANFAAKNAPPXCEIWFVYKGKHIWTREASETHCFVSSHPQPETTTXESLSCRSLQYGTTELLHSECLQSNSVRATRSTVPNIIIEAEATFSSKSSSCSSHCSPQHSEFDEETIDSQLIEAKAEANAAKDVELLECRRLEFIAIEAISKVNLFESAHAHEVKLRKEVEDAVRATIKEQRMLLEEKEKIASELERTTGSISFLGNCAHEINSKRDEAANELSLIQASFSSLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFSEEFPELAEFSLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSIEFQQEVRILGSLQHPNLVTLLGVCPEAWSFVYEFYPNGTLQDYLFRKGSLLPMTWSIRARCIFEIARALCFLHSSRPETIVHGGLTLETVLLDTALGCKICEFGFSRLVKEESLSLPSFHLITEPKGSFSYTDPELQRTGVLTPKSDVYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSTMVTQLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS
Length775
PositionTail
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-0.222
Instability index48.28
Isoelectric point6.02
Molecular weight86589.97
Publications
PubMed=25384727

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12065
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.74|      34|     249|     391|     425|       1
---------------------------------------------------------------------------
  391-  425 (59.71/55.13)	RWKSCGHVGA..DHCDGIIGfSEEFPELAEFSLSDLQ
  642-  677 (57.03/46.01)	RAVSCGKLSSilDSSAGEWN.STMVTQLAELGLQCCQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.65|      65|     366|     157|     233|       2
---------------------------------------------------------------------------
  157-  233 (97.77/92.41)	WFVyKGKHIWtrEASETHCFV.SSHPQP........ETTTxE.SLSCRSLQYGTTELLHSECLQSNSVratrstvpNIIIEAEATFS
  524-  599 (95.88/63.38)	WSI.RARCIF..EIARALCFLhSSRPETivhggltlETVLlDtALGCKICEFGFSRLVKEESLSLPSF........HLITEPKGSFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.18|      26|      26|     332|     357|       3
---------------------------------------------------------------------------
  332-  357 (44.41/29.62)	ELERTTGSISFLGNCAHEINSKRDEA
  360-  385 (42.76/28.25)	ELSLIQASFSSLQHEKQEIRRQKMEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12065 with Med32 domain of Kingdom Viridiplantae
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