<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12064

Description pre-mRNA-processing protein 40C isoform X1
SequenceMASPAWLPQEAKPPVSGETSLPMASPAPSSAHATPSTAPAPATPFPHGVLQNANVSGSPQQSSTHNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQSGGAFSSSQQHTQSSGKISESVAQDVTKLSSAASTPHSVPAHTSTMIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPGNPGPPGLTSSSIISINTAVPSTGTDSSSAALPRPNMPISAIASDPTAPLKGLPYPSMPSMAAPPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGVTLPAVPIPDSQPPGVTPVSGGSGTSTLASSNQPRGTTALQTEAISGPADDKKKLNAVVTQNEGAANNDQLEAWTAHKTEAGIIYYYNALTGESTYDKPAGFIGEPHQVSAQPTPVSMMDLPGTDWLSVSTSDGKKYYYNNRTKTSCWQIPNEVSELKKKQDGDVAKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPVPSVQTGSESNGSKAIESTSKGMQADNSKDKQKDTNGATNVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGYKQLLDEASEDINYNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKTQAMRAAAAASFKSMLKERGDISFNSRWSRVKESLRDDPRYKSVRHEDREGLFNEYLSELKAAEYATERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTTDAASHENDDGKTVLNSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHSHDSREDKHTDAKGRSSLESSKHQLESGRSHDRR
Length975
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.06
Grand average of hydropathy-0.811
Instability index55.42
Isoelectric point8.66
Molecular weight106984.17
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12064
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     414.79|      65|      65|     630|     694|       1
---------------------------------------------------------------------------
  582-  648 (78.26/45.63)	KERG..VAPFSKWEKELPK..........ivfDPRFKA....IPSYSARRS...LFEHYVKTR.....aeeeRKEKRA.AQK..AAIEGYKQLL
  649-  716 (96.27/57.92)	DEASEDINYNTDYQTFRKKWG.......N...DPRFEA....LDRKEQEHL...LNERVLPLK.....kaaeEK.TQA.MRA..AAAASFKSML
  717-  788 (80.24/46.98)	KERG.DISFNSRWSRVKESLR.......D...DPRYKS....VRHEDREGL...FNEYLSELKaaeyatereTKAKRE.EQD..KLREREREL.
  789-  819 (28.64/11.79)	................RK..........................RKEREEQ...EMERV.RLK...............iRRK..EAVTSFQALL
  820-  878 (64.88/36.51)	VETIKD..PLASWTESKPKLE.......K...DPQGRAtnpeLDSSDTEKL...FREHVKMLQ......ercAHE..............FRVLL
  885-  966 (66.50/37.61)	DAASHE...NDDGKTVLNSWStakrvlkS...DPRYNK....VPRKEREALwrrYAEDMLRRQ.kashshdsREDKHT.DAKgrSSLESSKHQL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     514.51|      96|      96|      74|     169|       2
---------------------------------------------------------------------------
    7-   46 (30.25/ 7.44)	..........................................................LPQEAKPP..V...SGETSlPMASPaPSSAHATPSTAPAP.A.TPFP
   74-  169 (172.88/79.82)	VNPVVFQPPVPGVSSHAALSFSYN..VPQSGGAFS.SSQQHTQSSGKISESVAQDVTKLSSAASTPHSV...PAHTS.TMIMP.PSDPNYRPTTSWMPTA.MSFP
  173-  252 (121.03/53.51)	VMPTPGNPGPPGLTSSSIISINTA..VP.STGTDS.SSAALPRPNMPIS.AIASDPTAPLKGLPYP.SM...P.....SMAAP.PQGL.......WLQAPqM...
  253-  325 (107.73/46.76)	..SGVFRPP........YLQYPAP..FP...GPFPfPARGVTLPAVPIPDSQPPGV........TPVSG...GSGTS.TL.AS.SNQP..RGTTALQTEA.ISGP
  326-  399 (82.61/34.01)	................ADDKKKLNavVTQNEGAAN.NDQLEAWTAHKTEAGIIYYYNAL.....TGESTydkPA....GFIGE.PHQVSAQPTPVSM....MDLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.35|      38|      61|     421|     458|       3
---------------------------------------------------------------------------
  421-  458 (66.13/39.55)	KTSCWQIPNEVSEL.KKK.QD.GDVAKDQLMSVPNTNVLSD
  482-  522 (48.92/27.32)	KPSNLQSPSSALDLiKKKlQDsGTPVTSSSIPVPSVQTGSE
  532-  557 (35.30/17.63)	TSKGMQADN..SKD.KQK..D.TNGATN....VSDT.....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12064 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EYATERETKAKREEQDKLRERERELRKRKEREEQ
2) IPNEVSELKKKQDGDVAKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSPSSALDLIKKKLQDSGTPVTSSSIPVPSVQTGSESNGSKAIESTSKGMQADNSKDKQKDTNGATNVSDTSSDSEDEDSGPSKEECII
3) LWRRYAEDMLRRQKASHSHDSREDKHTDAKGRSSLESSKHQLESGRSHDRR
4) MASPAWLPQEAKPPVSGETSLPMASPAPSSAHATPSTAPAPATPFPHGVLQNANVSGSPQQSSTHNVIKSNSTVNPVVFQPP
5) MSFPLHPVMPTPGNPGPPGLTSSSIISINTAVPSTGTDSSSAALPRPNMPISAIASDPTAPLKGLPYPSM
6) RGVTLPAVPIPDSQPPGVTPVSGGSGTSTLASSNQPRGTTALQTEAISGPADDKKKLNAVVTQNEGAANNDQLEA
7) VPQSGGAFSSSQQHTQSSGKISESVAQDVTKLSSAASTPHSVPAHTSTMIMPPSDPNYRPTTSWM
764
427
925
1
166
276
98
797
575
975
82
235
350
162










Molecular Recognition Features






MoRF SequenceStartStop




1) ALWRRYA
924
930