<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12061

Description probable mediator of RNA polymerase II transcription subunit 26b
SequenceMKSWSVDEWREYFVSANSDIFEIIENAIIVAATDCPKEFRVKRDAIAERLFCSRLTRCVGCDRVELAARGVGKESDDEGCKNGVERNEGELAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTXEMDEETQYMGEILRXKDVLLNREEESESVLFESLRRLQLMELTVDCLKATEIGKAVNXLRKRGSKEIRQLAKTLIDDWKRMVDDWVKATATNAIAASDEGTPDSVNPSVVDDEEEEGLPSPXMDEGAFFVAPTGSMELSQFFDGMDDDGNPRPSGPSHKNRDNNGRKPAIPNREDKSEQAKRNVADVPVRPNKPVSSDSGPGRPLPSNNMQRKSNVEPKMQQKIENNSITRRPPIGHLDKPMHSDDAAVQVKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKNVNYRNPHAKPGFHNRNRANTRR
Length437
PositionUnknown
OrganismVigna radiata var. radiata (Mung bean) (Phaseolus aureus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.05
Grand average of hydropathy-0.908
Instability index48.18
Isoelectric point5.17
Molecular weight48572.48
Publications
PubMed=25384727

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12061
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.03|      15|      48|     275|     295|       1
---------------------------------------------------------------------------
  275-  295 (21.77/26.77)	DDGNPRPSgPShknrdNN.GRK
  326-  341 (27.26/13.72)	DSGPGRPL.PS.....NNmQRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.17|      19|      41|     300|     323|       2
---------------------------------------------------------------------------
  300-  319 (28.10/15.42)	NREDKSEQAKRNvADVPVRP
  343-  361 (32.07/15.28)	NVEPKMQQKIEN.NSITRRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12061 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TATNAIAASDEGTPDSVNPSVVDDEEEEGLPSPXMDEGAFFVA
2) TGSMELSQFFDGMDDDGNPRPSGPSHKNRDNNGRKPAIPNREDKSEQAKRNVADVPVRPNKPVSSDSGPGRPLPSNNMQRKSNVEPKMQQKIENNSITRRPPIGHLDKPMHSDDAAVQVKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKNVNYRNPHAKPGFHNRNRANTRR
217
261
259
437










Molecular Recognition Features






MoRF SequenceStartStop




NANANA