<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12058
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MMEVAYVCEWEKRPKSNHCPSIPLVCAWSCRNLVAFTTDLKNEEDEKVSHMVHIIDTEHPWDVYSIYSGHAEVISCLEWDQSGSRLLSADGDGQIKCWAMADHLVNSWETSLGSAVDGDPIIALSWLHNGVKLALHVEMSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTVSLLKPNGQLLTASESLCRLRGRVSLADIAFTGGGNIVVAATDGSSSSPVQFYKVCVSVVNEKCRIDTELLPSLFMRCTTDPVRRDKYPAVTHLKFLTRENSEQVLLCASSQTGSIVECWSLRKEGLPVNNIFQHRSPVVGEKQPMILKWRILSATNDLDRVSAVALPKLPISISNPDLKVASDTKFCPGLGLALAFHDGSIQILHRLSLHTMGVFYGSSSGSSQRPGEEPAIKRQRAGGHTVHFKALQFSWTSLALAGVDNHGKLHMIRVSPSMGQMLDMNTLLRHLLFLLEYCMVTGYDWWDVLLHVQPGMVHNLVEKLHEEYMRQNQALQQVLSTRIVAVKASLCKLSAATAARACDFHAKLLLIAISATLKSLLRPHVLNTPDKSPGDRLAEICAKNTDTDIDKVMINLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLMANLPNQGSIVRPGFGFLRDGSSLGMLREMMVMIRIWGLLKPGCLPIYTATSDNQDSMSLLFRLLTKLWLCSRDEGHPQEPDEPLIDECCLLPSQLLVPSMDWLPVNDGIICKLQGKQPLRLQFGKPYSLPGLNSTAQVEIFSRSPGAQRMDNLRCLHMGVCPTEESKACTRCGCVTMLRSPNKTNAMKQWEQRWIKNCLCGGLWRRILSTLS |
Length | 834 |
Position | Tail |
Organism | Salmo salar (Atlantic salmon) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes>
Salmonidae> Salmoninae> Salmo.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.039 |
Instability index | 45.42 |
Isoelectric point | 7.88 |
Molecular weight | 92570.42 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP12058
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 83.64| 24| 95| 440| 463| 1
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440- 463 (44.52/33.83) DNHGKLHMIRVSPSMGQMLDMNTL
539- 562 (39.12/28.73) DFHAKLLLIAISATLKSLLRPHVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 330.38| 104| 418| 186| 329| 2
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77- 126 (59.57/16.39) .........................................................................LEWDQS.....GSRLL..SADGD.GQI.KCWAM.ADHL.VNSWETSLGSAV.DGDPIIaLSW
214- 329 (161.64/121.32) GNIVVAA....TDGSSSSPVQFYKVCVSV...VNEKCridtelLPslFMRCTTDpvRRDK....YPAVTHLKFLTRENS.....EQVLL..CASSQTGSIVECWSLrKEGLPVNNIFQHRSPVVgEKQPMI.LKW
629- 728 (109.17/49.52) GSIVRPGfgflRDGSSLGMLREMMVMIRIwglLKPGC......LP..IYTATSD..NQDSmsllFRLLTKLWLCSRDEGhpqepDEPLIdeCCLLPSQLLVP..SM..DWLPVN.....................
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