<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP12053

Description striatin-4
SequenceMNLGELADLTVANDNDLTVDLQDNREEFKKTWNPRFTLRSHFDAIRALTFHPSQAVLLTASEDGTLKLWNLNKAIHSKKNAALDVEPIYTFRAHSGAVLSLAMGEDGDSCYSGGLDGTVRCWKIPDLNVDPYDNYDPGIESSVLSGHEDSVWGLTYSAHHHRLASCSADGTVRIWEPQNSAPCLSVFNKEKEHGTPTSVAFVNSDPDQAVVSFDGGETLLYDLNTEQSIMVLETGTKDGSKLINCVVSHPSEPISITAHENRTIRYLDNKTGKVIHSMVAHLDAVTCLTTDPKGTYLISGSHDCSVRLWMLDNRTCVQEITAHRKKHDEAIHDVAFHPSQPFIASAGADALAKIFV
Length356
PositionTail
OrganismSalmo salar (Atlantic salmon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Salmo.
Aromaticity0.07
Grand average of hydropathy-0.308
Instability index30.96
Isoelectric point5.35
Molecular weight39126.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP12053
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     290.74|      48|      51|      33|      80|       1
---------------------------------------------------------------------------
    9-   41 (26.80/15.32)	................LTVANDNDLTV.D..L.QD.......N......REEFKK...twNPRFT.........LR..SH
   42-   94 (74.39/57.70)	FDAIRALTFHPSQAVLLTASEDGTLKLWN..L.NK.......A......IHSKKNaaldvEPIYT.........FR..AH
   95-  147 (48.11/34.30)	SGAVLSLAMGEDGDSCYSGGLDGTVRCWK..IpDL.......N......VDPYDN..........ydpgiessvLS..GH
  148-  191 (42.04/28.89)	EDSVWGLTYSAHHHRLASCSADGTVRIWE..P.QN.......SapclsvFNKEK..........................
  243-  281 (32.78/20.64)	...INCVVSHPSEPISITAHENRTIRYLDnkT.GK.......V......IHS........................mvAH
  282-  327 (46.44/32.81)	LDAVTCLTTDPKGTYLISGSHDCSVRLWM..L.DNrtcvqeiT......AHRKKH.........................
  329-  355 (20.16/ 9.41)	.EAIHDVAFHPSQPFIASAGADALAKIF....................................................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP12053 with Med16 domain of Kingdom Metazoa
Unable to open file!