<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11988

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYREKLAHQQQAAGAGSASGTQGPQPGGTKNGEGGTAANGEENGAHALANHHADMMEVDGDVEIPQNKAMVLRGHESEVFICAWNPVNDLLASGSGDSTARIWNLSENSTGSSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPVKTFQGHTNEVNAIKWDPTGSLLASCSDDMTLKIWSMKQDSCVHDLQAHSKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVERGVCIHTLTRHQEPVYSVAFSPDGRHLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNATGDKVGASASDGSVCVLDLRK
Length518
PositionTail
OrganismSalmo salar (Atlantic salmon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Protacanthopterygii> Salmoniformes> Salmonidae> Salmoninae> Salmo.
Aromaticity0.07
Grand average of hydropathy-0.329
Instability index35.02
Isoelectric point5.44
Molecular weight55919.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11988
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     389.70|      40|      40|     326|     365|       1
---------------------------------------------------------------------------
  145-  178 (27.07/11.21)	..................LANHHADM.MEVdgdV..EIPQNKAM.VLRGHESEVFI
  179-  202 (23.39/ 8.74)	CAWNPVN.........dlLASGSGDSTARI...W..NL..................
  206-  234 (20.68/ 6.91)	..................STGSSTQLVLRH...CirEGGQDVP..S....NKDVTS
  235-  275 (47.27/24.80)	LDWNSEG.........tlLATGSYDGFARI..wT..KDGN..LASTLGQHKGPIFA
  276-  304 (35.15/16.65)	LKWNKKG..........nF..........I...L..SAGVDKTTIIWDAHTGE..A
  318-  358 (60.65/33.80)	VDWQSN..........ntFASCSTDMCIHV...C..KLGQDRPVKTFQGHTNEVNA
  359-  400 (63.76/35.89)	IKWDPTG.........slLASCSDDMTLKI...W..SMKQDSCVHDLQAHSKEIYT
  401-  451 (55.32/30.22)	IKWSPTGpgtnnpnanlmLASASFDSTVRL...W..DVERGVCIHTLTRHQEPVYS
  452-  492 (56.41/30.95)	VAFSPDG.........rhLASGSFDKCVHI...W..NTQTGALVHSYRG.TGGIFE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11988 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KLAHQQQAAGAGSASGTQGPQPGGTKNGEGGTAANGEENGAHALANHHADMMEVDGDVEIPQNKA
102
166










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
10
16