<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11944

Description mediator of RNA polymerase II transcription subunit 30
SequenceMANPGPYQQYQYQQQRQQQQQQYNQPGGTAMHQQPPPSLQQQFSDSHQGSLHQGQGSWGGQGQTQLASPTKDVNTASLCKTGQETVQEIVQKTLEIFQVLHQLKLPNNTAGNSVQMYQDKKAKLEDHMKAIQVSFKKLRLMYNKVQEICQHFDTKQTECLIPYINGPEVDDGGAHATEAVRYSSEEHREIAEQIRNKNRHLKEIIDQLRTVIWEINTMAAMRKT
Length224
PositionHead
OrganismLingula unguis
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Brachiopoda> Linguliformea> Lingulata> Lingulida> Linguloidea> Lingulidae> Lingula.
Aromaticity0.06
Grand average of hydropathy-0.965
Instability index48.82
Isoelectric point7.77
Molecular weight25643.44
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11944
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.03|      14|      18|      20|      33|       1
---------------------------------------------------------------------------
   20-   33 (27.73/13.16)	QQQYNQPGGTAMHQ
   40-   53 (26.30/12.17)	QQQFSDSHQGSLHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.36|      24|      32|      98|     121|       2
---------------------------------------------------------------------------
   98-  121 (41.29/25.74)	QV.LHQLKLPNNTAGNSVQMYQDKK
  132-  156 (38.07/23.27)	QVsFKKLRLMYNKVQEICQHFDTKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11944 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MANPGPYQQYQYQQQRQQQQQQYNQPGGTAMHQQPPPSLQQQFSDSHQGSLHQGQGSWGGQGQTQLA
1
67










Molecular Recognition Features






MoRF SequenceStartStop




1) MANPGPYQQYQYQQQRQQ
1
18