<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11943

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSFSSDEVNFLVYRYLQESGFAHSAYTFGIESHISQSNINGALVPPAALLSVIQKGLQYTEAEISIGEDGSERVIESLSLIDAVMPDVVESRKQAAAKSHQIKNETSNTNGDDTAHSISNHNDAMEIDGTLEIPASKATVLRGHESEVFICAWNPCNDLLASGSGDSTARIWNMNDSSNSANQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGKFLATGSYDGFARIWSTDGRLVSTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDASSGHCTQQFAFHSAPALDVDWQTNNSFASCSTDQCIHVCKLGVDKPIKTFQGHTNEVNAIKWDPQGNYLASCSDDMTLKIWNMKQDSCVHDLQAHNKEIYTIKWSPTGPGTNNPNAQLILASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGKFLASGSFDKCVHIWNVQSGALINSYRGSGGIFEVCWNHRGDKVGASASDGTVVVLDLRK
Length489
PositionTail
OrganismLingula unguis
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Brachiopoda> Linguliformea> Lingulata> Lingulida> Linguloidea> Lingulidae> Lingula.
Aromaticity0.08
Grand average of hydropathy-0.310
Instability index35.93
Isoelectric point5.59
Molecular weight53342.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11943
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     125.12|      20|      39|     208|     227|       1
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  153-  171 (24.32/ 9.29)	....................................WNpCN.DLLASGSGDSTARI
  172-  226 (22.23/ 7.94)	WnmndssnsanqlvlrhciqkggtevpsnkdvtsldWN.CDGKFLATGSYDGFARI
  291-  308 (25.21/ 9.87)	....................................WQ.TNNSF.ASCSTDQCIHV
  332-  350 (28.55/12.02)	....................................WD.PQGNYLASCSDDMTLKI
  402-  443 (24.81/ 9.60)	W.............dvdrgicihtltkhqepvysvaFS.PDGKFLASGSFDKCVHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.71|      29|      90|      22|      56|       2
---------------------------------------------------------------------------
   22-   56 (39.68/41.82)	AHSaytfgIESHISQSNINGALVPPAALLSVIqKG
  115-  143 (51.02/33.04)	AHS.....ISNHNDAMEIDGTLEIPASKATVL.RG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.34|      25|      81|     375|     399|       3
---------------------------------------------------------------------------
  249-  264 (18.70/ 8.55)	............WNKKGNYIL.SAGVDKT.
  375-  399 (45.28/32.44)	SPTGPG.....TNNPNAQLILASASFDSTV
  454-  482 (41.35/28.91)	SYRGSGgifevCWNHRGDKVGASAS.DGTV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11943 with Med16 domain of Kingdom Metazoa
Unable to open file!