<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11886

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMENFTALFGAQADPPPPPTALGFGPGKPPPPPPPPPGGGPGAAPPPAATAAPPGADKSAAGCGPFYLMRELPGSTELTGSTNLITHYKLEHDYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRLMHIQPPKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKKKKKEKKKKKNRHSPDHPGMGSSQASSSSSLR
Length243
PositionHead
OrganismDipodomys ordii (Ord's kangaroo rat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Castorimorpha> Heteromyidae> Dipodomyinae> Dipodomys.
Aromaticity0.05
Grand average of hydropathy-1.015
Instability index63.16
Isoelectric point9.76
Molecular weight26133.63
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:Ensembl

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP11886
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.55|      16|      16|      14|      29|       1
---------------------------------------------------------------------------
   14-   29 (37.09/12.78)	PPPPPTALGFGPGKPP
   31-   46 (37.46/12.99)	PPPPPPGGGPGAAPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.86|      16|      17|     189|     204|       2
---------------------------------------------------------------------------
  170-  183 (26.37/10.38)	P..PKKNKHKHKQSRT
  189-  204 (28.02/11.42)	PETPSDSDHKKKKKKK
  208-  223 (26.48/10.45)	PERKKKKKEKKKKKNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.20|      20|     113|     110|     130|       3
---------------------------------------------------------------------------
  110-  130 (36.72/22.79)	PDLPGMIdLPGSHDN.......SSLR....SL
  132-  159 (19.40/ 6.45)	EKPP..I.LGGSF.NpitgtmlSGFRlhtgPL
  226-  242 (32.08/15.31)	PDHPGM....GSSQA.......SSSS....SL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11886 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ENFTALFGAQADPPPPPTALGFGPGKPPPPPPPPPGGGPGAAPPPAATAAPPGA
2) FLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPIT
3) TMLSGFRLHTGPLPEQCRLMHIQPPKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKKKKKEKKKKKNRHSPDHPGMGSSQASSSSSLR
2
108
147
55
145
243










Molecular Recognition Features






MoRF SequenceStartStop




1) DSDHKKKKKKKEEDPERKKKKKEKKKKKNRHSPDH
2) FGPGKPPP
3) MENFTA
194
23
1
228
30
6