<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11869
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MAAPEAGRYGECGPRPPARLGARISQDPGTVLGAVGMMDLAYVCEWEKWPKSTYCPSVPLACAWSCRNLIAFTTDLRNDDQDLARMIHILDTEHPWDVHSISSEHSEVITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSMSPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDVNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRSLDEPAIKRPRTTGPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHPLEAKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVEKLHEEYMRQKPALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLMAISSTLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLVPSLDWLPASDSLVSRLQPKQPLRLFFGRAPPLPGSATTLQLDGLARAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLNSPNETTAVKQWEQRWIKNCLCGGLWRRVPLSYS |
Length | 866 |
Position | Tail |
Organism | Dipodomys ordii (Ord's kangaroo rat) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Euarchontoglires> Glires> Rodentia> Castorimorpha> Heteromyidae>
Dipodomyinae> Dipodomys.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.028 |
Instability index | 49.59 |
Isoelectric point | 7.47 |
Molecular weight | 95635.06 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP11869
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 144.15| 47| 188| 109| 156| 1
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109- 156 (83.42/52.87) ITCLEW...DQSGSRLL..SADADGQIKCWSM.ADHL.ANSWESSVGSLVeGD..PI
305- 360 (60.73/33.63) ITHLKFlarDMSEQVLLcaSSQTSSLVECWSLrKEGLpVNNIFQQISPVV.GDkqPM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.08| 27| 132| 47| 73| 2
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47- 73 (53.49/29.24) EKWPKSTYCPSVPLACAWSCRNLIAFT
182- 208 (48.59/25.92) EKFSRVKFSPSLTLFGGKPMEGWIAVT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.11| 12| 492| 217| 228| 3
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217- 228 (22.09/12.13) LLKPSG.QVLTST
692- 704 (20.03/10.31) LLKPSClPVYTAT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 111.71| 34| 299| 234| 270| 6
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234- 270 (52.32/48.73) LRGRVALADIAFTgggNIVVATADGSSMSPVQFYKVC
537- 570 (59.39/44.47) MRQKPALQQVLST...RILAMKASLCKLSPCTVTRVC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 173.42| 53| 385| 406| 470| 8
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409- 461 (91.09/62.98) LAFHDGSVHIVHRL.SLQTMAVFYSSAAP.....RSLDEPAIKRPRTTGPAVHFKAMQL
754- 812 (82.33/35.97) LDWLPASDSLVSRLqPKQPLRLFFGRAPPlpgsaTTLQLDGLARAPGQPKIDHLRRLHL
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