<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11858

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADVAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPADTNALVAAVAFGKGLSNWRPSGSSGPGQPGQPGTGTILAGASGLQQVQMAGAPSQQQPMLSGVQMAQASQPGKMPSGIKTNIKSASMHPYQR
Length268
PositionHead
OrganismDipodomys ordii (Ord's kangaroo rat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Castorimorpha> Heteromyidae> Dipodomyinae> Dipodomys.
Aromaticity0.04
Grand average of hydropathy-0.579
Instability index46.14
Isoelectric point6.45
Molecular weight29278.79
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364144

GO - Cellular Component
mediator complex	GO:0016592	IEA:Ensembl

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11858
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.19|      24|      27|      59|      84|       1
---------------------------------------------------------------------------
   59-   84 (32.97/28.97)	LNKvLKHEKTPLFRNQViIP..LVLSPD
   89-  114 (38.22/23.76)	LMR.QTEGRVPVFSHEV.VPdhLRTKPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.80|      39|      39|     168|     206|       2
---------------------------------------------------------------------------
  122-  165 (23.47/ 7.99)	..KQlTTDAARIGADVAqkqIQSLNKMCSNLlekiskeeRE..SE..SGG.....
  168-  206 (72.53/37.17)	PNKQ.TFNPADTNALVA...AVAFGKGLSNW........RP..SG..SSGPGQPG
  208-  248 (51.80/24.85)	PGTG.TI.LAGASGL.Q...QVQMAGAPSQQ........QPmlSGvqMAQASQPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.01|      20|      28|       7|      26|       3
---------------------------------------------------------------------------
    7-   26 (31.60/25.08)	QLEASLDAL.....LNQVADLKNSL
   32-   56 (27.41/20.81)	KLENEYDRLtwpsvLDSFALLSGQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11858 with Med8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FSHEVVPDHLRTKPDPEVEEQEKQLTTDAARI
2) LSNWRPSGSSGPGQPGQPGTGTILAGASGLQQVQMAGAPSQQQPMLSGVQMAQASQPGKMPSGIKTNIKSASMHPYQR
100
191
131
268










Molecular Recognition Features






MoRF SequenceStartStop




1) MPSGIKTNIKSASMHPYQR
250
268