<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11840

Description LOW QUALITY PROTEIN: U-box domain-containing protein 35
SequenceMSRSIQDKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLVHVRQRASSIPTTTGNHVSVDGNDDVARAYMQQMDNESKELFASFRVFCNRKNILCKEVLLEDLDVSKAIIEGIATYSIELLVLGAASRSGLVRRFRTTDVPNLVSKGAPPFCTVYIISKGKISSVKTATTPLASKAIPRNNGLQQQQILKNPERMDAQQLLRNHPPRPSTEKPAYLARHQIEEDEIKSPFTRGARPIHRSYESTIPDSDISFVSSGRPSVDRMFPSLYEEMDSQTGMTPRLSIGSDFDLRSFGSSFSGAKSIDQNDYSFSSQDSGMSMSSQPRISNSDEVEAEMRRLRLELKQTMEMYSTACKEALTAKQKALELQRWKLDEQRKIEDARLSEETALAIAEKERAKCKVALEAAEASRKIAELEAQKRVSAEMKSHTESEYKKRSGGDGMLHGPARYRRYTIEEIEEATKYFSNSLKIGEGGYGPVYRAELDHTAVAIKVLKPDAAQGRSQFQQEVEVLSSIRHPNMVLLLGACPEYGCLVYEHMASGSLDDCLFRRNNSKLPVLPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTATAGTFCYIDPEYQQTGMLGTKSDVYSLGIMLLQMITAKPPMGLSHHVARSIERGTFADMLDPAVEDWPMEQAMHFAKLALQCAEMRRKDRPDLGKVILPELNKLRDFADENMPMMMMMYGGAAGFTPRSNNNYSRSTFLQSIQDTMSESPSMSGMSGYESRSSSXSVGKM
Length803
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.447
Instability index54.26
Isoelectric point8.44
Molecular weight89557.22
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11840
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.57|      35|      40|     254|     289|       1
---------------------------------------------------------------------------
  254-  289 (61.90/33.89)	DSDI.SFVS..SGRPSVDRMFPSlYEEMDSQTGMT..PRLS
  293-  332 (49.67/23.20)	DFDLrSFGSsfSGAKSIDQNDYS.FSSQDSGMSMSsqPRIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.14|      50|     372|     112|     162|       2
---------------------------------------------------------------------------
  112-  162 (81.59/59.80)	VSKAIIEGIATySIELLVLGAA.SRSGL...VRRFRTTDVPNLV.SKGA.PPF.CTVY
  483-  539 (65.55/42.35)	VYRAELDHTAV.AIKVLKPDAAqGRSQFqqeVEVLSSIRHPNMVlLLGAcPEYgCLVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.05|      35|      42|     398|     438|       3
---------------------------------------------------------------------------
  359-  396 (44.16/29.52)	CKEALTAKQKALELQrwKLDEQRKIEdARLSEETALAI
  404-  438 (54.89/28.75)	CKVALEAAEASRKIA..ELEAQKRVS.AEMKSHTESEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.66|      17|     229|     220|     243|       4
---------------------------------------------------------------------------
  190-  206 (29.94/15.54)	LQQQQI....LKNPERMDAQQ
  223-  243 (24.71/19.27)	LARHQIeedeIKSPFTRGARP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11840 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DQNDYSFSSQDSGMSMSSQPRISNSDEVEAEMRR
2) RNNGLQQQQILKNPERMDAQQLLRNHPPRPSTEKPAYLARHQIEE
310
186
343
230










Molecular Recognition Features






MoRF SequenceStartStop




NANANA