<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11840

Description LOW QUALITY PROTEIN: U-box domain-containing protein 35
SequenceMSRSIQDKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLVHVRQRASSIPTTTGNHVSVDGNDDVARAYMQQMDNESKELFASFRVFCNRKNILCKEVLLEDLDVSKAIIEGIATYSIELLVLGAASRSGLVRRFRTTDVPNLVSKGAPPFCTVYIISKGKISSVKTATTPLASKAIPRNNGLQQQQILKNPERMDAQQLLRNHPPRPSTEKPAYLARHQIEEDEIKSPFTRGARPIHRSYESTIPDSDISFVSSGRPSVDRMFPSLYEEMDSQTGMTPRLSIGSDFDLRSFGSSFSGAKSIDQNDYSFSSQDSGMSMSSQPRISNSDEVEAEMRRLRLELKQTMEMYSTACKEALTAKQKALELQRWKLDEQRKIEDARLSEETALAIAEKERAKCKVALEAAEASRKIAELEAQKRVSAEMKSHTESEYKKRSGGDGMLHGPARYRRYTIEEIEEATKYFSNSLKIGEGGYGPVYRAELDHTAVAIKVLKPDAAQGRSQFQQEVEVLSSIRHPNMVLLLGACPEYGCLVYEHMASGSLDDCLFRRNNSKLPVLPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTATAGTFCYIDPEYQQTGMLGTKSDVYSLGIMLLQMITAKPPMGLSHHVARSIERGTFADMLDPAVEDWPMEQAMHFAKLALQCAEMRRKDRPDLGKVILPELNKLRDFADENMPMMMMMYGGAAGFTPRSNNNYSRSTFLQSIQDTMSESPSMSGMSGYESRSSSXSVGKM
Length803
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.447
Instability index54.26
Isoelectric point8.44
Molecular weight89557.22
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11840
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.57|      35|      40|     254|     289|       1
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  254-  289 (61.90/33.89)	DSDI.SFVS..SGRPSVDRMFPSlYEEMDSQTGMT..PRLS
  293-  332 (49.67/23.20)	DFDLrSFGSsfSGAKSIDQNDYS.FSSQDSGMSMSsqPRIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.14|      50|     372|     112|     162|       2
---------------------------------------------------------------------------
  112-  162 (81.59/59.80)	VSKAIIEGIATySIELLVLGAA.SRSGL...VRRFRTTDVPNLV.SKGA.PPF.CTVY
  483-  539 (65.55/42.35)	VYRAELDHTAV.AIKVLKPDAAqGRSQFqqeVEVLSSIRHPNMVlLLGAcPEYgCLVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.05|      35|      42|     398|     438|       3
---------------------------------------------------------------------------
  359-  396 (44.16/29.52)	CKEALTAKQKALELQrwKLDEQRKIEdARLSEETALAI
  404-  438 (54.89/28.75)	CKVALEAAEASRKIA..ELEAQKRVS.AEMKSHTESEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.66|      17|     229|     220|     243|       4
---------------------------------------------------------------------------
  190-  206 (29.94/15.54)	LQQQQI....LKNPERMDAQQ
  223-  243 (24.71/19.27)	LARHQIeedeIKSPFTRGARP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11840 with Med32 domain of Kingdom Viridiplantae
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