<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11838

Description U-box domain-containing protein 35-like isoform X3
SequenceMSAKISVRTPRFCTVYAVSKGNLSIRPSDMQIDETITDDTSEISFSSSSSSNYTSTTQTDSGSVASYAALHTSSLATQRFQALSNMNQTLLSTTHGLNETNHSRGQSIDLGRENPATSSARNSDFGRALSRASSYRSIVSDPESWINDQNCLKGSPVATKLSSPNRQENFTLELEKLRIELRHFQGMHAVAQTENIDASRKLNELSKRRSGESMKMKEIIAKEEVANELATQQREKYEAAAREAEYLKECAEREAAERKETELKAIRAAKEKEKLEDALSGSTLQYRKFTWDEIVLATSSFSEELKIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQNKQFQQELEILSRIRHPNLLLLLGACSDHGCLVYEYMENGNLEDRLLQKNSNNPIPWFERFRIAWEVASALSFLHSSKPQPIIHRDLKPANILLGRNLVSKIGDIGLSTILNSDELSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPAIALTHVVEMAIEGGNLTDILDPKAGSWPFQETLDLARLALSCAELRRKDRPDLKDHVLPILERLKEVSDRAHHSASMITIKPKPPNHFICPILQDLMDDPCVAADGYTYNRNAIEKWLEENEKSPMTNMDLPHKLLIPNYTLLSAILEWKSKEI
Length655
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.06
Grand average of hydropathy-0.432
Instability index41.76
Isoelectric point6.18
Molecular weight73324.30
Publications
PubMed=26259924

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11838
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.56|      18|     135|     374|     391|       1
---------------------------------------------------------------------------
  374-  391 (33.06/24.12)	MENGNLEDRLLQKNSNNP
  512-  529 (34.50/25.50)	IEGGNLTDILDPKAGSWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.28|      33|     103|      78|     110|       2
---------------------------------------------------------------------------
   78-  110 (56.81/35.77)	QRFQALSNMNQT.LLSTTHGLNETNHSR.GQSIDL
  182-  216 (48.47/29.54)	RHFQGMHAVAQTeNIDASRKLNELSKRRsGESMKM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.92|      14|      19|     221|     239|       3
---------------------------------------------------------------------------
  221-  239 (12.89/22.01)	AKE.EVANELAtqqrEKyEA
  241-  255 (21.03/11.71)	AREaEYLKECA....ER.EA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11838 with Med32 domain of Kingdom Viridiplantae
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