<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11830

Description mediator of RNA polymerase II transcription subunit 33B-like isoform X1
SequenceMSMTVVWERVIEITKWAQEKKTEAVVWSIEVSSWLKTAGVSLPSVELAHRLVSHICWENHVAGTWKYLEKAMEVRMVPPLLVLALLSTKVVPNRHPLLHPSAYSLYLHLLNKHVFSLSSHINSPNYPSLMNSIHNVLRLSQLYDYYYDDDDDHPHPGVVLVHFLFTLVWQLLEASLQDEGLLQHNSLLFVDPDLDLTMELELELDNHHHNVHVNNNNSNKHTLHAKNTATAIQFIARFLHNKVTSRILSLVQRNMPTHWGAFVNELERLAAKSLILRSLKNVSPKSFFPLNFKSKKMKLSSVLAASASAVQSHNDSSLWLPIDLILEDAMDGDHVMAASAVELLTGLVKALQAVNATAWHNAFLGLWIAALRLVQRERDPCEGPVPRLDTCLCMLLCITTLVVANVIEEEEGELIEEAERSPTNQRKDKPALGKCRGELVTSLQLLGDYEDLLNPPQPVIWVANQAAAKAIMFVSGHSGYLEYMNLNDLPTNCSGNLWHLIIEACIARHLIDTSAYFWPGYVSSPCNQPLHSIPNHLPSWSSLMKGSPLTPPMVNALVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHVVFFIIKLLSPPVPPKYSGTENHLISYAPFLNVLLVGISPVDSVQIFSLHGAVPLLAAALMPICEAFGSCVPSVSWTSATGDKLSCHAVFSNAFVLLLRLWRFNHPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLASFGKSPRDRIRSRRFSKMISFSSEPLFMDSFPKLNTWYQQHQECLASTRCALVPGGPILQIVDALLSMTCRKINRSAQSLTSTTSGSSNSSGSSLDDALMKLKVPAWDILEAAPFVLDAALTACAHGRLSPRELATGLKDIADFLPATLATIVSYLSAEVTRGVWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVNVPSLAIADGNAPATLPLPLAAFLSLTITYKLDKSSERFLVLIGPSLINLSSGCPWPCMPIVGSLWAQKVKRWSDFFVFSASGTVFHHSRDAVVQLLKSCFTSTLGLGSACIYNNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDAMFLTEEIVSLLMLSVRDIASGGLPKGEAHKLKKAKYGMRYGQVSLAASMTRVKHAALLGASFLWISGGSSLVQSLITETLPSWFLSAQGLEQEVGESGVVVAILRGYALAYFAVLSGTFAWGIDSLSAASKRRPKVLGIHLEFLANALDGKISLRCDCATWRAYVSGFMSLMVSCTPLWIEELDASILKRVSKGLRQLNEDDLALHLLEIRGTSLMGEVAEMISQNGF
Length1321
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.08
Grand average of hydropathy0.193
Instability index45.17
Isoelectric point6.78
Molecular weight144579.87
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11830
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.89|      50|      52|     757|     808|       1
---------------------------------------------------------------------------
  703-  752 (48.16/18.18)	RLWRFNHPPVehVMGgaATPALGS..QLGPEYLLLVRnCMLASFGksPRDR....I.....
  759-  808 (89.00/46.63)	KMISFSSEPL..FMD..SFPKLNTWYQQHQECLASTR.CALVPGG..PILQ....IVDALL
  813-  863 (62.73/26.53)	RKINRSAQSL..TST..TSGSSNSSGSSLDDALMKLK....VPAW..DILEaapfVLDAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.57|      11|      17|       6|      16|       2
---------------------------------------------------------------------------
    6-   16 (22.35/12.88)	VWERVIEITKW
   26-   34 (18.09/ 9.02)	VWS..IEVSSW
   56-   65 (22.13/12.68)	CWENHVAGT.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     207.41|      54|      57|    1155|    1211|       3
---------------------------------------------------------------------------
 1149- 1205 (82.06/59.17)	ALL.GASFLWIsGGSSLvqSLITETLPS......WFLS..AQGLEQEVGESGVVVAIL..RGYALAYF
 1206- 1262 (79.09/47.27)	AVL.SGTFAW..GIDSL..SAASKRRPKvlgihlEFL...ANALDGKISLR.CDCATW..RAYVSGFM
 1263- 1308 (46.26/24.47)	SLMvSCTPLWI............EELDA......SILKrvSKGLRQ.LNEDDLALHLLeiRGTSL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.38|      19|      57|      95|     117|       4
---------------------------------------------------------------------------
   95-  117 (26.28/22.29)	HPllHPSAysLYLHLLNKHVFSL
  153-  171 (36.09/17.54)	HP..HPGV..VLVHFLFTLVWQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.94|      27|      49|     304|     332|       5
---------------------------------------------------------------------------
  304-  332 (42.70/29.02)	AASASAVqsHND.SSLWL.PIDLIL..EDAMDG
  353-  383 (37.23/19.23)	AVNATAW..HNAfLGLWIaALRLVQreRDPCEG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11830 with Med33 domain of Kingdom Viridiplantae
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