<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11812

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMEQRLIATGPAESLAAAIADPTVSDVDKVLLNLGAKEFTVEPSTLQSLQQLIQWIANLALNIVGRYAEHKKNNHYDIMSDSCVLNTLRELIVIIRIWGLLRSSCLPVFICCFDSLDVLATLYKLLSRMIHNKDVALTGLDESLVDECMVLQNQVVIPSLTQLYENVCDVANPLFYQTFAPLCMEYGSDPVSSYSEDCLLAPSPTSRQYTDIIRHVYLGRHPPLIKSCTRCGGRTQVLSMARTAAVRAWEGRWVQACRCGGHWNMNRAADKKSLLRDNI
Length278
PositionTail
OrganismDiaphorina citri (Asian citrus psyllid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Psylloidea> Liviidae> Diaphorina.
Aromaticity0.07
Grand average of hydropathy0.055
Instability index57.47
Isoelectric point6.30
Molecular weight31089.67
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11812
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.24|      16|      27|     224|     243|       1
---------------------------------------------------------------------------
  224-  243 (22.13/24.75)	IKSCtRCGGRtqvLSMARTA
  253-  268 (35.11/22.06)	VQAC.RCGGH...WNMNRAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.30|      26|      29|     163|     189|       2
---------------------------------------------------------------------------
  163-  189 (46.90/36.86)	YENVCDVA.NPLFYQtFAPLCME.Y.GSDP
  193-  221 (36.41/23.25)	YSEDCLLApSPTSRQ.YTDIIRHvYlGRHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11812 with Med16 domain of Kingdom Metazoa
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