<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11801

Description Mediator of RNA polymerase II transcription subunit 7
SequenceMSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGFK
Length226
PositionMiddle
OrganismDiaphorina citri (Asian citrus psyllid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Psylloidea> Liviidae> Diaphorina.
Aromaticity0.06
Grand average of hydropathy-0.715
Instability index50.99
Isoelectric point5.84
Molecular weight26500.62
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11801
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.34|      29|      45|     148|     176|       1
---------------------------------------------------------------------------
  148-  176 (48.96/31.21)	NETSQRFHVHLDRV...NQILNQAIENLPDTD
  191-  222 (44.39/27.71)	NDSNRKDDASVDGVnpyDRLMCELVDNMPLTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.90|      26|      27|      81|     107|       2
---------------------------------------------------------------------------
   81-  107 (39.92/26.70)	KLNHSLLVnFLDLIDLLVQC.PDSPRRT
  109-  135 (39.98/22.24)	KVEDISLL.FIHIHHLLNEFrPHQARET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11801 with Med7 domain of Kingdom Metazoa
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