<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11800

Description probable mediator of RNA polymerase II transcription subunit 36b
SequenceMRPPRGRGGGGGGFRGRGDGGRGRGRGGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVVGESVYNEKRIAVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAVA
Length305
PositionUnknown
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.334
Instability index29.00
Isoelectric point10.21
Molecular weight32072.25
Publications
PubMed=22753475

Function

Annotated function
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW
GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP11800
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.13|      16|      17|      26|      41|       1
---------------------------------------------------------------------------
   18-   34 (34.69/ 7.97)	GDGGRGRgRGGG.GGGRG
   35-   52 (31.44/ 6.69)	GGGGRGMsRGGGrGGGRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.69|      15|      17|     186|     202|       2
---------------------------------------------------------------------------
  186-  202 (21.96/23.68)	AKKR.....TNVipIIEDARHP
  203-  222 (20.73/13.72)	AKYRmlvgmVDV..IFSDVAQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.44|      13|      16|      57|      69|       4
---------------------------------------------------------------------------
   57-   69 (23.12/10.48)	RGGGM...KGGSKVVV
   73-   88 (17.32/ 6.11)	RHEGIfiaKGKEDALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.68|      12|      24|     134|     147|       5
---------------------------------------------------------------------------
  134-  147 (12.32/16.93)	VDDIwIKPGArVLY
  159-  170 (21.36/12.02)	VSDV.VGPTG.IVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.76|      10|      17|      94|     103|       6
---------------------------------------------------------------------------
   94-  103 (17.33/10.41)	VGESVYNEKR
  114-  123 (20.42/13.35)	VEYRVWNPFR
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP11800 with Med36 domain of Kingdom Viridiplantae

Intrinsically Disordered Regions

IDR SequenceStartStop
1) MRPPRGRGGGGGGFRGRGDGGRGRGRGGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGMKGGSKVV
1
68

Molecular Recognition Features

MoRF SequenceStartStop
1) MRPPRGRGGGGGGFRGRGDGGRGRGRGGGGGGRGGGGGRGMSRGGGRGGGRGRGGGR
1
57