<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11798

Description U-box domain-containing protein 52
SequenceMWLPRYSLERKEKLNVNGFVAVAIDKDKGSQGALKWAIDHLLQRGHTVFLIHVKLKSPSNSTQKMKPDPEASVKDLFLPFRCFCTRKDIQCKDVVLEDTDVAKAIIEYAANTTIENIVVGASAKSGFLRFKATDVPGSIVKGAPDFCNVFVISKGKIQSMRSASRPAPTVGALRGQLAQQCSTKSDTPDFPVSHSASARVSLDKPPLDLPNKSQDEADFMRSPFTRKGYNYKPSYGDLPMQDSDISFVSSGRPSIDRIFPTLYESQDMVGRATPPQISSSTDLDLTRSFESLQLGRMSLDMNFPSEFSSISQDSDRLSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAVEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAFDALAQTDNIRYRKYTIEEIEAATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGMFETILDPAITDWPVEEALSFAKLSLKCAELRRKDRPDLGKAILPELNRLRAMAEDTMHPTLMGDASPSRNNSQVSLQLGAMASSPQSYNSSRNPSVNF
Length774
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.385
Instability index49.70
Isoelectric point7.85
Molecular weight86280.79
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11798
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.32|      25|      28|     199|     223|       1
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  186-  211 (26.71/12.04)	...DTPDFpvSHSA.....saRVSLD.KPPL.DLPN
  212-  240 (32.64/16.21)	KSQDEADF..MRSP.....ftRKGYNyKPSYgDLPM
  278-  304 (21.96/ 8.69)	SSSTDLDL..TRS.feslqlgRMSLD....M.NFP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     258.37|      89|     352|       3|     102|       2
---------------------------------------------------------------------------
    3-  102 (134.65/113.00)	LPRYSLERKEKLN...VNGFVAVAI.DKDKG.SQGALKWAidhllQRGHTVflihVKLKSPSNSTQKMKPDPEASVKDlfLPFRCFCTRKDIQCKDVVLEDTDVA
  362-  455 (123.72/79.18)	LQRWKLEEEQRLEearLAGEAALALaEQEKAkSKAAVEAA.....EAARRI....AELEAQKRMKAEMKALKEAEEKK..KAFDALAQTDNIRYRKYTIEEIEAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.66|      32|     351|     141|     177|       4
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  142-  174 (54.03/41.43)	GA.PDF.CNVF.VISKGKIQS..MRSASRPaPTVGALR
  519-  555 (43.63/17.50)	GAcPEYgCLVYeFMANGSLEDrlLRRGNTP.PLSWQLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.00|      10|      15|     316|     325|       7
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  316-  325 (17.15/10.77)	RLSIS.SQSME
  333-  343 (12.85/ 6.30)	RLKLElKQTME
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11798 with Med32 domain of Kingdom Viridiplantae
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