<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11794

Description U-box domain-containing protein 35-like isoform X1
SequenceMAEEETIDSYSNNHTMIAISRDKNSQYAVKWAVEHLFNRKNTGDCILIHVRSQGLHPQEADSIPKEYRPPTEAELHQFFLPYRGFCARKGIVAKEIIIHDIDVPNALIDHVSKHSISNIVVGASNRNPIMRKFKNPDVATCLLKSAPESCSVYVIARGKVHTKRLRKRNKSQTDMNESQTGTPRVGSSLSKTRKSAYSSISGLSEDKYRDSSGTSNDSMSGISDFSGPLSFKSIETSFENLDFSPSSSETSTRSYVSSSTPPSIESEMKRLRFELKQMMEMYDSASKEAAVAKQKAKELEQLKMEKEEDDKIERGKSADEALTALAEFEKQKNKAAAEATLVAQKLAELETQKKQIITEEKARIEAEERKKTMELFERSNICYRRYSIDEIEVATDHFNESNKIGEGGYGPVYQALLDHTSVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIPWRIRFRIACDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHDKFPEILDPTITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLMPELSRLKNLGLGETPPKSKLANVSKAHDQQPPNSAPVLKGSESEIYVRKRWQRLQVSTRFWSQKGIGVNTISSQIKKRWSIPSIPISGKRVDVMKKKQQQQQHLQSSQRCWSFASCASAANMGWKKLNSFS
Length789
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.557
Instability index51.57
Isoelectric point8.80
Molecular weight89168.61
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11794
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     309.53|      96|     132|     454|     557|       1
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  454-  557 (151.99/121.24)	VLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIP.WRIrfriacDIATALLFLhQMKPEPVVHRDLKPANILLDHNyVSKIGDVGLARLVPPSVADSVTQYH
  589-  685 (157.54/102.35)	VLLLQLITARSPMGLSYQVEEAIEHDKFPEILDPTITdWPI......EDTLGLAQL.ALKCCELRKRDRPDLRTVLMPE.LSRLKNLGLGETPPKSKLANVSKAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.05|      17|      18|     316|     332|       2
---------------------------------------------------------------------------
  316-  332 (29.86/20.34)	KSADEA.LTA..LAEFEKQK
  334-  353 (19.19/10.63)	KAAAEAtLVAqkLAELETQK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.04|      64|     103|     112|     178|       3
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  112-  178 (104.54/86.61)	SKHSISNI..VVGASNRNPIMRKFKNPDVATcllKSAPESCSVYVIARG....KVHTKRLRKRNKSQTDMNES
  215-  284 (99.50/73.11)	SNDSMSGIsdFSGPLSFKSIETSFENLDFSP...SSSETSTRSYVSSSTppsiESEMKRLRFELKQMMEMYDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.56|      11|      49|     710|     720|       4
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  710-  720 (22.36/15.43)	QRLQVSTRFWS
  760-  770 (24.19/17.31)	QHLQSSQRCWS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11794 with Med32 domain of Kingdom Viridiplantae
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