<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11793

Description pre-mRNA-processing protein 40C
SequenceMSSASTVSQSVSLPAPPTSNSVANGSSIPNLIPSTSPVPPAPSFHIHQLPPVAPMVPGPPGMSPSTPLVSTGPAVLFPPTDSASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVSPPHAMWFQPPQLGAMPRPPFIPYSASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVASAIPVPSGHGNQLIGNSLIQTDSNHPELDSQKHTQVVGHSENISLNKHSEDWTAHKTEAGIIYYYNALTGESTYEKPPGFRGEAENLVAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVSELRQQNDEKTKELSAPLPNNNALTDLGTSSSSINTPAINTGGREATPLRTVGIPGSSSALDLIKKKLQDSGTPVASSPISATTVAQSDVNLPRDADATVKALQTENNKDKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEALDRKDRENLLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDINVNSRWFRVKDSLREDPRYRSVKHEEREMLFNEYISELKAAEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSETEKLFREHVKMLQERCANEFRNLLSEAFTAEVVAQVSEDGKTVLSSWTMAKRILKPDPRYGKVPRKEREALWRRYADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD
Length846
PositionUnknown
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.798
Instability index50.22
Isoelectric point8.46
Molecular weight94206.64
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11793
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     208.78|      45|      46|      33|      78|       1
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    1-   56 (50.22/23.64)	......MS..S.ASTVSQSVSLPAPptsnsvangssipnliPSTSPV.....P.....PAP.......SFH.IHQLPpVAPMV
   57-  102 (62.63/26.52)	PGPP.GMS.PS.TPLVSTGPAVLFP......................ptdsaS...tiPGP.......NMHaIHN.P.IHPSA
  104-  149 (60.86/25.57)	PQIC.GSY.PSlTPVVSPPHAMWFQ................PPQLGA.....M.....PRPpfipysaSYH........GPL.
  150-  190 (35.07/11.54)	PFPArGMPlPS.VPL.........P............dpqpPGVTPV.....QvasaiPVP.......SGH.GNQL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     232.56|      41|      64|     556|     596|       2
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  556-  596 (68.57/46.84)	KDRENLLNERVLCLKKAAVEKAQALWAASTTSFKSMLQERE
  623-  661 (53.87/35.13)	EEREMLFNEYISELKAAEEEKQRESKARKEEQEK..LKERE
  668-  699 (43.72/27.05)	KEREEQEMERVR.LK...VRKKEAV.....ASFQALLVESI
  700-  721 (31.08/16.99)	KD...................PQASWTESKVKLEKDPQGRA
  729-  759 (35.31/20.36)	SETEKLFREHVKMLQERCANEFRNLLSEAFT..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     213.21|      50|      51|     203|     252|       3
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  203-  252 (84.77/53.01)	P....ELDSQKHTQVVGHSENISL.NKHSEDWTAHKTEAGIIYYYNALTG..ESTYE
  255-  304 (75.26/46.28)	P....GFRGEAE.NLVAQATSVSMsNLSGTDWVLVTMGDGKKYYYNNKTK..ISSWQ
  306-  356 (53.18/30.65)	PnevsELRQQNDEKTKELSAPLPN.NNALTDLG...TSSSSINTPAINTGgrEAT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.42|      55|      88|     409|     470|       4
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  409-  470 (81.80/98.07)	VKALQTENNKDK..PKDANADGNVSDSSSDSEDVDSgPTNEQliiQFKemlKERGV.APFSKWDK
  498-  555 (82.61/71.85)	VKTRAEEERKEKraAQKAAIEGFKQLLDSASEDIDH.TTSYQ...TFK...KKWGNdSRFEALDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.94|      21|     170|     600|     620|       5
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  600-  620 (40.03/22.04)	VNSRWFRVKDSLREDPRYRSV
  773-  793 (39.92/21.96)	VLSSWTMAKRILKPDPRYGKV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11793 with Med35 domain of Kingdom Viridiplantae
Unable to open file!