<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11793

Description pre-mRNA-processing protein 40C
SequenceMSSASTVSQSVSLPAPPTSNSVANGSSIPNLIPSTSPVPPAPSFHIHQLPPVAPMVPGPPGMSPSTPLVSTGPAVLFPPTDSASTIPGPNMHAIHNPIHPSARPQICGSYPSLTPVVSPPHAMWFQPPQLGAMPRPPFIPYSASYHGPLPFPARGMPLPSVPLPDPQPPGVTPVQVASAIPVPSGHGNQLIGNSLIQTDSNHPELDSQKHTQVVGHSENISLNKHSEDWTAHKTEAGIIYYYNALTGESTYEKPPGFRGEAENLVAQATSVSMSNLSGTDWVLVTMGDGKKYYYNNKTKISSWQIPNEVSELRQQNDEKTKELSAPLPNNNALTDLGTSSSSINTPAINTGGREATPLRTVGIPGSSSALDLIKKKLQDSGTPVASSPISATTVAQSDVNLPRDADATVKALQTENNKDKPKDANADGNVSDSSSDSEDVDSGPTNEQLIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDSASEDIDHTTSYQTFKKKWGNDSRFEALDRKDRENLLNERVLCLKKAAVEKAQALWAASTTSFKSMLQEREDINVNSRWFRVKDSLREDPRYRSVKHEEREMLFNEYISELKAAEEEKQRESKARKEEQEKLKEREREWRKRKEREEQEMERVRLKVRKKEAVASFQALLVESIKDPQASWTESKVKLEKDPQGRASNPDLDSSETEKLFREHVKMLQERCANEFRNLLSEAFTAEVVAQVSEDGKTVLSSWTMAKRILKPDPRYGKVPRKEREALWRRYADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD
Length846
PositionUnknown
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.798
Instability index50.22
Isoelectric point8.46
Molecular weight94206.64
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11793
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     208.78|      45|      46|      33|      78|       1
---------------------------------------------------------------------------
    1-   56 (50.22/23.64)	......MS..S.ASTVSQSVSLPAPptsnsvangssipnliPSTSPV.....P.....PAP.......SFH.IHQLPpVAPMV
   57-  102 (62.63/26.52)	PGPP.GMS.PS.TPLVSTGPAVLFP......................ptdsaS...tiPGP.......NMHaIHN.P.IHPSA
  104-  149 (60.86/25.57)	PQIC.GSY.PSlTPVVSPPHAMWFQ................PPQLGA.....M.....PRPpfipysaSYH........GPL.
  150-  190 (35.07/11.54)	PFPArGMPlPS.VPL.........P............dpqpPGVTPV.....QvasaiPVP.......SGH.GNQL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     232.56|      41|      64|     556|     596|       2
---------------------------------------------------------------------------
  556-  596 (68.57/46.84)	KDRENLLNERVLCLKKAAVEKAQALWAASTTSFKSMLQERE
  623-  661 (53.87/35.13)	EEREMLFNEYISELKAAEEEKQRESKARKEEQEK..LKERE
  668-  699 (43.72/27.05)	KEREEQEMERVR.LK...VRKKEAV.....ASFQALLVESI
  700-  721 (31.08/16.99)	KD...................PQASWTESKVKLEKDPQGRA
  729-  759 (35.31/20.36)	SETEKLFREHVKMLQERCANEFRNLLSEAFT..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     213.21|      50|      51|     203|     252|       3
---------------------------------------------------------------------------
  203-  252 (84.77/53.01)	P....ELDSQKHTQVVGHSENISL.NKHSEDWTAHKTEAGIIYYYNALTG..ESTYE
  255-  304 (75.26/46.28)	P....GFRGEAE.NLVAQATSVSMsNLSGTDWVLVTMGDGKKYYYNNKTK..ISSWQ
  306-  356 (53.18/30.65)	PnevsELRQQNDEKTKELSAPLPN.NNALTDLG...TSSSSINTPAINTGgrEAT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.42|      55|      88|     409|     470|       4
---------------------------------------------------------------------------
  409-  470 (81.80/98.07)	VKALQTENNKDK..PKDANADGNVSDSSSDSEDVDSgPTNEQliiQFKemlKERGV.APFSKWDK
  498-  555 (82.61/71.85)	VKTRAEEERKEKraAQKAAIEGFKQLLDSASEDIDH.TTSYQ...TFK...KKWGNdSRFEALDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.94|      21|     170|     600|     620|       5
---------------------------------------------------------------------------
  600-  620 (40.03/22.04)	VNSRWFRVKDSLREDPRYRSV
  773-  793 (39.92/21.96)	VLSSWTMAKRILKPDPRYGKV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11793 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADDTMRKQKLANDHKGEKYNDYKNRATTDAGKFPSKPRIHD
2) EEEKQRESKARKEEQEKLKEREREWRKRKE
3) GNQLIGNSLIQTDSNHPELDSQKHTQVVGHSENISLNKHSED
4) LIKKKLQDSGTPVASSPISATTVAQSDVNLPRDADATVKALQTENNKDKPKDANADGNVSDSSSDSEDVDSGPTNEQLII
5) MSSASTVSQSVSLPAPPTSNSVANGSSIPNLIPSTSP
6) PPAPSFHIHQLPPVAPMVPGPPGMSPSTPLVSTGPAVLFPPTDSASTIPGPNMHAIHNPIHPS
7) QIPNEVSELRQQNDEKTKELSAPLPNNNALTDLGTSSSSINTPAINTGGREATPLRTVGIP
8) RGMPLPSVPLPDPQPPGVTPVQVASAIPVP
806
640
187
372
1
39
304
154
846
669
228
451
37
101
364
183










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRILK
2) EKYNDYK
3) LIIQFK
4) LIKKKL
5) RYGKVPRKEREALWRRYAD
780
822
449
372
789
785
828
454
377
807