<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11784

Description LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like
SequenceMAVSVQNNLWDRVTELTKVAQQKGVDPLLWAIQLSSNLNSAGVVLPSVELANLLVSHICWENNEPVSWKFLEKALMLNIVPPILVLALLTTRVISRRQFQPVAYRLYLELLRRHAFKLKSHIHGLKYKEVMASVDAVLCLSETFNLPANDPGTLVVEFIFSIVWQLLDATLADEGLLELIMEEKSKWPAKPQEMELDGHNGYDDKWTEQRERLRNVNIELTIEIIGKFLEDSVTSRILQLACRNMPSHWADLIQRLQLLGENSSVLRNSKSLDSEIFLQFTSDTWTIFSQEFKQNSQQKFHPIRAFGSPAASASLCHRTHYSALWLPLDLVLEDAMDGYQVEATSAIEKITSLVKTLKAINGTSWHDTFLGLWIASLRLVQRERDPIEGPVPRIDTRLCLLLCITVLVIADLIEEEESATIDETEYVASHHWKEKKTPGKCRNELISSLQILGEYQSLLTPPQDVISACNQAAAKAMMFVSGISVNNAYFECINMKDMPMNSSGNMRHLIVEACIARNLLDTSAYFWRGYVNGCISQMPQSIPPQAPGWSAFMKGALLNHIMINVLTSTPASSLAELEKIFEIAVKGSDEEKISAATILCGASLIRGWNIQEHTVHYITRLLSPPVPTDYSGCESHLIGYAPMLNVLIVGIASIDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNLNWTLSTGEEISAHAVFSNAFTLLLKLWRFNHPPLDHGVGDAPTVGSQLTPEYLLLVRNSHLISGNVHKDRNKMRLSAVASSSSPQPIFVDSFPKLKAWYRQHQACIASTLSGHVHGNPVHQTVDGLLNMMFRRINGGNQPLTSVTSGSSSSSGAGNEDPSLRPKLPAWDIMEAVPFVIDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGLWKPVFMNGTDWPSPAENLSNVEEQIKKILAATGVDVPSLAAGGSSPATLPLPLAAFVSLTITYKIDRASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLQNCDAVVQLLKSCFTATLGLTANPLSNNGGVGALLGHGFGSHFCGGISPVAPGILXLRVYRSIRDVALLVEEILSLLMDSVREIACNGAGKDKSGKLKTTNNAKRYGQISLSSAMTQVKLAASLGASLVWLSGGLVLVQSVIKETLPSWFISVHRSEQEKCSEGIVSMLGGYALAYFAVLCGAFAWGTESSSSASKRRPKILGVHMEFLASALDGKISLGCDWATWRAYVTGFVSLMVGCTPSWVLDVDVEVLKRLSNGLRQWNEEELALALLGLGGFGTIGAAAELIIESEF
Length1325
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.08
Grand average of hydropathy0.135
Instability index45.30
Isoelectric point6.13
Molecular weight144864.59
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11784
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.85|      21|      50|     317|     338|       1
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  317-  338 (35.20/27.81)	HRThYSALWL.PLDLVL..EDAMDG
  366-  389 (30.65/18.04)	HDT.FLGLWIaSLRLVQreRDPIEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     196.50|      65|      76|     853|     924|       2
---------------------------------------------------------------------------
  853-  924 (94.03/82.67)	PAwDIMEAVPFVIDAALTACahGKLSPrELATGLKDLADfLPASLATIVSY.FSAEVTRGLWKpvFMN...........GTDWP
  926- 1002 (102.46/61.94)	PA.ENLSNVEEQIKKILAAT..GVDVP.SLAAGGSSPAT.LPLPLAAFVSLtITYKIDRASQR..FLNlagpaleslaaGCPWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.61|      26|      50|     208|     234|       3
---------------------------------------------------------------------------
  208-  234 (38.68/36.01)	EQRERLRNvNIELTIEIIGKFLEDSVT
  261-  286 (44.92/36.34)	ENSSVLRN.SKSLDSEIFLQFTSDTWT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.56|      36|      78|     543|     581|       4
---------------------------------------------------------------------------
  543-  581 (55.58/44.89)	PPQAPGWSAfMKGALLNHI.MINVLTSTPASslAELEKIF
  624-  660 (61.98/38.69)	PPVPTDYSG.CESHLIGYApMLNVLIVGIAS..IDCVQIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.81|      40|      92|    1155|    1197|       5
---------------------------------------------------------------------------
 1155- 1197 (61.39/52.44)	SLGAS.LVWLS..GGlvLVqSVIKETLPSWFISVHRSEQEKCSEGI
 1250- 1292 (63.42/42.73)	SLGCDwATWRAyvTG..FV.SLMVGCTPSWVLDVDVEVLKRLSNGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11784 with Med33 domain of Kingdom Viridiplantae
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