<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11780

Description U-box domain-containing protein 33-like
SequenceMAGSGGEDWVYVAVGNDINECKLNLVYAIKHSGGRRICILHVHEPAKFIPILGTKFLASSMEEEEVNAYRELERQDANKILDVFLLLCHQAGAQAEKLYFESDKIKKGIVELVSLHGIRSLVMGAAADKYYSRKMTKIRSRKAMYVHLNAAASCQIQFVCKGQLIRIREACPQEAHADISPSSPQSQNINGVSWRTDQFGQFNGRISNSPSIVMERLTISETISNASGTWSPFERSYATSPSSGCTDVASSRSEEDSYGLGLSSPLRLTNFAPNTSPHLSGFQQDGNANDSLYIQLEKAITDAANARREAFREALKRAKAEKELDEAICWAKVSETLYAEESRGRKEAEEALSKEREELDNVKNQVNEMMKDLQIAQNNELKLENQIAQSDEMVKELEQKILSAIQLLHNYKNDRDELLKQRDEALQELDDIRKRQVEARSQRSAQLISEFSFSEIVEATRKFDPSLKIVEGENGSMYKGLLYNTEVSIKMLCSHNLQNPVEFQREVDALSKLRHPNLATLIGVCPEACILVYDYFPNGNLEDRLACKDNSSPLSWKTRILIATDLCSALIFIHSNKICKIVHGDMKPSNVLLDANYVPKLAGFGICHFLTHDEKSSYNENLSVGHDAMGNHEFPLTTAFDVYSFGMVLLSLLTGQSYLRMEEDVQIAIKKRKLKDVLDPRAGDWPFVQAEQLAQLALRCCNTDSTYRPDLVSDAWRVLEPMRASCGGSLSVCLSFGDQQVQPPPYFICPIFQEVMEDPHVAADGFTYEAEALRGWLDSGHDTSPMTNLRLDHQNLVPNRALRSVIQEWLQQHQ
Length814
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.392
Instability index46.84
Isoelectric point5.53
Molecular weight91505.62
Publications
PubMed=22753475

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11780
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.88|      25|      48|     346|     371|       1
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  347-  371 (38.86/25.57)	EAEEALSKEREELDNVKNQVNEMMK
  396-  420 (38.02/20.06)	ELEQKILSAIQLLHNYKNDRDELLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.57|      14|      29|      92|     107|       2
---------------------------------------------------------------------------
   92-  107 (20.21/20.69)	GAQAEKLYfeSDKIKK
  124-  137 (26.36/18.17)	GAAADKYY..SRKMTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.23|      24|      48|     444|     467|       3
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  444-  467 (39.57/27.03)	SAQLISEFSFSEIVEATRKF.DPSL
  494-  518 (37.66/25.37)	SHNLQNPVEFQREVDALSKLrHPNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.58|      27|      28|     185|     211|       4
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  185-  211 (49.15/33.08)	QSQNIN.GVSWRTDQFGQFNGRISNSPS
  215-  242 (42.43/27.58)	ERLTISeTISNASGTWSPFERSYATSPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11780 with Med32 domain of Kingdom Viridiplantae
Unable to open file!