<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11778

Description ATP-dependent DNA helicase Q-like 4A isoform X1
SequenceMREDQGNLGDGLKFGGKCPKMNWLEHSKAHKDFSCQKKFLCSNFLFSLPEQKPSTTGATDTGNLACQMQNLQRIQRSQIEKAWNALSNFQISCRHYAKLGNTRQVKDVFSDRPADSRRITSNSLSDANASSQHKKVHRHFSEYNVDTTKPSSFRSNLSASRNIKVMEDQNDVDGNNMARLRTINHSHFQRVGDSVSFATNQKNICPSFLEDEDDEIIENIDVDQIVEQYQSQSACTPQPSVSKLPPITPIFEKDNVAKQEESNYPDELCTNCSHGFKIELCPEASSHLQELKDRLISISNDLLDNVNNLSPVQIDKLRQERVHLNKQIQLLERHISLDAVNEERRRSHLFATTVTPKTFHFETPQGAEFRTDAKLNTSYIHQDLEPRRIEPWNSMGSSYVDERFGMSSGPVEREPYIPKVIDVNYIEGSNDKKWSSRNFSWTKELEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLIQANISAAYLSANMEWSEQQEIFRDLSSDCTKYKLLYVTPEKVAKSDFLLRHLESLNARHLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKIPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCVDDIDKFIKENHFDECGIVYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDPGNCKKTCDNCLKSMNLIEKDVTDIAKQLVDLVRSMGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEVKKNDIYGSVSSLLKVNETKVQSLLNGGQRITLRFPSITKTNKLSKFEMTPAKGSLVFGKMYPNIDTPAQPQSEVDVQLSAKLYSSLRMLRTNLVKEAADGVMAYHIFGNATLQQISRRVPRSKEELLDINGIGKAKVSKYGDRILETIESTINEFYGAGKNGSNSNDSNDSGKRRRGGNKDKDEYLDENDATKSFDRSKKRATNIQSIDPKVHNSSRPEHPDQFFDSELDFDDSHYEIRDLELNNNLDHGNDGRVLPSWS
Length1209
PositionUnknown
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.08
Grand average of hydropathy-0.587
Instability index52.05
Isoelectric point7.55
Molecular weight137190.29
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11778
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.77|      17|      42|     152|     171|       1
---------------------------------------------------------------------------
  152-  171 (26.00/23.67)	SFRSNlsaSRNI..KVMEDQND
  196-  214 (25.77/14.95)	SFATN...QKNIcpSFLEDEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.10|      33|     152|     749|     781|       3
---------------------------------------------------------------------------
  749-  781 (62.15/40.66)	VIHHSLPKSIEGYHQE...CGRAGRDGLRS..SCVLYY
  901-  938 (48.95/30.40)	VYRGSLSQFVKKHRHEklsLHGAGKHLLKSdaSRILHY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.61|      23|     989|     121|     149|       6
---------------------------------------------------------------------------
  121-  143 (39.83/17.64)	SNSLSDANASSQHKK.VHRHFSEY
 1112- 1134 (31.86/11.69)	SNS.NDSNDSGKRRRgGNKDKDEY
 1146- 1162 (18.91/10.66)	RSKKRATNIQSIDPK.VH......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.68|      26|     921|     260|     285|      10
---------------------------------------------------------------------------
  260-  285 (50.76/31.07)	EESNYP..D.ELCTNCSHGFKIELCPEAS
 1181- 1209 (40.93/23.63)	DDSHYEirDlELNNNLDHGNDGRVLPSWS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11778 with Med34 domain of Kingdom Viridiplantae
Unable to open file!