<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11773

Description ATP-dependent DNA helicase Q-like 4A isoform X2
SequenceMREDQGNLGDGLKFGGKCPKMNWLEHSKAHKDFSCQKKFLCSNFLFSLPEQKPSTTGATDTGNLACQMQNLQRIQRSQIEKAWNALSNFQISCRHYAKLGNTRQVKDVFSDRPADSRRITSNSLSDANASSQHKKVHRHFSEYNVDTTKPSSFRSNLSASRNIKVMEDQNDVDGNNMARLRTINHSHFQRVGDSVSFATNQKNICPSFLEDEDDEIIENIDVDQIVEQYQSQSACTPQPSVSKLPPITPIFEKDNVAKQEESNYPDELCTNCSHGFKIELCPEASSHLQELKDRLISISNDLLDNVNNLSPVQIDKLRQERVHLNKQIQLLERHISLDAVNEERRRSHLFATTVTPKTFHFETPQGAEFRTDAKLNTSYIHQDLEPRRIEPWNSMGSSYVDERFGMSSGPVEREPYIPKVIDVNYIEGSNDKKWSSRNFSWTKELEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLIQANISAAYLSANMEWSEQQEIFRDLSSDCTKYKLLYVTPEKVAKSDFLLRHLESLNARHLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKIPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCVDDIDKFIKENHFDECGIVYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDPGNCKKTCDNCLKSMNLIEKDVTDIAKQLVDLVRSMGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEVKKNDIYGSVSSLLKVNETKVQSLLNGGQRITLRFPSITKTNKLSKFEMTPAKGSLVFGKMYPNIDTPAQPQSEVDVQLSAKLYSSLRMLRTNLVKEAADGVMAYHIFGNATLQQISRRVPRSKEELLDINGIGKAKVSKYGDRILETIESTINEFYGAGKNGSNSNDSNDSGKRRRGGNKDKDEYLDENDATKSFDRSKKRATNIQSIDPKVHNSSRPEHPDQFFDSELDFDDSHYEIRDLELNNNLDHGNDGRVLPSWS
Length1186
PositionUnknown
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.585
Instability index51.32
Isoelectric point7.56
Molecular weight134587.48
Publications
PubMed=22753475

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11773
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     636.69|     207|     273|     425|     656|       1
---------------------------------------------------------------------------
  425-  656 (323.12/277.27)	YIEGSNDKkwSSRNF...SWTKElEAN..NKKV.FGNHSFRPNQREVINATMS....GYDvfvlmptgggkslTYQLPALICPGVTlVISPLVSLIQDQIMhliqaNISAAYLSANMEWSEQQEIFRDLSSDCTKYKLLYVTPEKVAKSDFLLRHLESLNARHLLARIVIDEAH....CVSQWGHDFRPD.....YQG.LG..ILKQKFPKipvLALTATATASVKEDVVQALG.LINCIIFRQSFNRPNLWYSV
  706-  935 (313.57/212.83)	FYHGSMDP..AQRSFiqkQWSKD.EINiiCATVaFGMGINKPDVRFVIHHSLPksieGYH.............QIRVKHMISQGAT.EQSPLVSGYNRTNL.....GSSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDPGNCKKTCDNCLKSMNLIEKDVTDIAKqlvdLVRSMGQQFSSAhilevYRGsLSqfVKKHRHEK...LSLHGAGKHLLKSDASRILHyLVIEDILVEEVKKNDIYGSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.77|      17|      42|     152|     171|       2
---------------------------------------------------------------------------
  152-  171 (26.00/20.60)	SFRSNlsaSRNI..KVMEDQND
  196-  214 (25.77/12.96)	SFATN...QKNIcpSFLEDEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.67|      26|      42|      72|      98|       3
---------------------------------------------------------------------------
   72-   98 (40.57/39.83)	QRIQRSQIEKAwNALSNFQISCRHYAK
  117-  142 (44.10/35.17)	RRITSNSLSDA.NASSQHKKVHRHFSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.12|      24|     966|      12|      42|       5
---------------------------------------------------------------------------
   15-   38 (47.87/45.79)	GGKCPKMNWLEHSKAHKDFSCQKK
 1103- 1126 (42.25/19.00)	GGNKDKDEYLDENDATKSFDRSKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.61|      47|     898|     238|     285|       6
---------------------------------------------------------------------------
  238-  285 (83.01/60.57)	QPSV..SKLPPITPIFEkDNVAKQEESNYP..D.ELCTNCSHGFKIELCPEAS
 1135- 1186 (74.61/49.45)	DPKVhnSSRPEHPDQFF.DSELDFDDSHYEirDlELNNNLDHGNDGRVLPSWS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.17|      28|     747|     288|     316|       7
---------------------------------------------------------------------------
  288-  316 (40.28/32.64)	LQELKDRLISISNDLLDnVNNLSPVQIDK
 1038- 1065 (44.89/31.13)	LQQISRRVPRSKEELLD.INGIGKAKVSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11773 with Med34 domain of Kingdom Viridiplantae
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