<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11742

Description U-box domain-containing protein 32 isoform X3
SequenceMGSADEIGLPLQFDVEDTIFVAVGTDVDDAKATLVWAVQNFAGKIFCLLHVYHLPPKNEEPSSYTLKEHVGQAFEEPERQKPFELLNQYVLILAKLGVQAQKVWIETNNVERGIVEIIAQYSIKWLVMGLDTERYNMKRSIGLKSKKAFYVSQQAPIWCHIWFVCRGRLIYSREGRMGRSKSSEVGINYTDHLKPESVTYAQEKENAGDRISRFRYQGLVDQKLYNNGDLGTSRTTLLLKNEGVKEGHPVSQSGLQEASMNGKSIKDFEGVKAWVEKDTVGAEFKAESLESSCMEEVKKRKEMEELLEKEKKEVERMNKERDGLLEELQHVEEQKSVLERKASEYQSDMEELEKKMFAAVDLLVSFKEKRDKLLIEREGAMDKLRKLKNIVKREPSRYHNAEMPMFSFVEIIEATRNFDPSWKIGEGRHGSVYKGLLRHMDVALKMFPSYGSHSQSAFQYEQVEVLSRVRHPNLVSIIGACPESRLIVYENLKNGSLEDHLACKNHNCPLPWQTRIRIAADICSALIFLHYSDPCIVHGDIKPSKILLDTNFIAKLGGLGISRLIPQEEKAFNSASVCNISKENNPYIDPEYLETGKFTSESDVYSVGVILLRILTGRTPPGIVKDVKCAIENDNIVVVLDSSAGDWPHDLAEQLALVALRCCEKEKLDRPDLVSELWCVLEPMRSIASASCSSLKKHSRVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFQSGHNTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL
Length771
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.08
Grand average of hydropathy-0.376
Instability index40.07
Isoelectric point6.00
Molecular weight87560.27
Publications
PubMed=22753475

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11742
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.29|      16|      21|     299|     316|       1
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  287-  302 (24.53/ 9.18)	ESLESSCMEEVKKRKE
  305-  320 (25.76/17.38)	ELLEKEKKEVERMNKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.66|      49|      53|     383|     434|       2
---------------------------------------------------------------------------
  335-  381 (47.39/24.56)	....KSVLERKASEYQSDmeelEKKMFAA..VDLLVS...FkEKRDKLL...IEREGAM
  384-  432 (85.57/61.87)	LRKLKNIVKREPSRYHNA....EMPMFSF..VEIIEATRNF.DPSWKIG...EGRHGSV
  437-  485 (56.70/31.63)	LRHMDVALKMFPS.YGSH....SQSAFQYeqVEVLSRVRHP.NLVSIIGacpESR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.40|      20|      53|      99|     122|       3
---------------------------------------------------------------------------
   99-  122 (26.75/26.45)	QAQKVWIETNNVERGivEIIaqYS
  153-  172 (42.65/26.33)	QQAPIWCHIWFVCRG..RLI..YS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.56|      41|      53|     174|     214|       5
---------------------------------------------------------------------------
  174-  214 (69.81/45.68)	EGRMGRSKSSEVGINY.TDHLKPESVTYAQEKENAGDRISRF
  227-  268 (63.75/41.10)	NGDLGTSRTTLLLKNEgVKEGHPVSQSGLQEASMNGKSIKDF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11742 with Med32 domain of Kingdom Viridiplantae
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