<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11740

Description U-box domain-containing protein 33-like isoform X3
SequenceMVDLKSKKAIYVRSQAPAFCHIEFICKGNLICTREGISDEAQVETIISSPQISPDAESSEVTHRRSQSLPLGQDNSREVGSPSSSLRPRGRSLLLDHFRGNILDPSSPDIRSGVHAARNLEVNEAKDEWGLLTRRSPSERSENSTRSPRGVIDMAPSPFFRVELCANGLEQDGNTSDNLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRVAEGLYAEELKQRKEVEQELAKEKAKLESIKTQLNEEMEELRIAQDQKASLERDLLEADLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRENQSTGRDLTQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQIRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDEMLNSETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGNLESILDPLAGDWPFVQAEQLARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGRLSIQLGSAEHSQPPSYFICPIFQEVMQDPHVAADGYTYEAEAMRGWLDSGHDTSPMTNLKLEHRNLVPNRALRSAIQEWLHHN
Length706
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.482
Instability index51.73
Isoelectric point5.62
Molecular weight79683.36
Publications
PubMed=22753475

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11740
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.11|      63|     466|       3|      72|       1
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    3-   72 (91.00/85.35)	DLKSKKAIYvrsQAPAFCHI.EF.ICKgnLICTREGISDEAQVETiISSPQ.....ISPDAESS.EVThRRSQSLPLG
  470-  540 (92.10/61.95)	DLKPANVLL...DANFVCKLgDFgICR..LLSRDEMLNSETLVWR.TDNPKgtfayMDPEFLSSgELT.TKSDVYSFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     286.01|      90|     262|      77|     178|       2
---------------------------------------------------------------------------
   77-  178 (140.84/115.71)	REVGSPSSSLRPR...GRSLLLDHFRGNiLDPSSPDIRSgVHAARNLEVNEAKDEWGLLTRrspsersensTRSPRGV..IDMAPSPFFRV..ELCANGLEQDGNTSDN
  339-  435 (145.17/92.08)	REIEEATKNFDPSlkiGEGGYGSIFRGN.LRHTMVAIKI.LHSDSSQGPSEFQQEVNVLSK..........MRHPNLVtlIGACPEAWVLIyeYLCNGSLEDRLSCKDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.55|      58|      89|     184|     241|       3
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  184-  241 (90.55/58.27)	ERVMMEAANARRE...AFLEAIARRKSEKETVNALHRVRVAEGLYAEELKQRKEVEQELAK
  271-  331 (85.00/54.26)	ERDLLEADLTAKEleqKILSAVELLQSYKREREELQIQRDNALREAEELRENQSTGRDLTQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11740 with Med32 domain of Kingdom Viridiplantae
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