<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11738

Description U-box domain-containing protein 35-like isoform X2
SequenceMEVTADQAKKNHMLLPSSSPVVAVAISGKKNSKYIIRWSLEKFLPEGIIDFKLLHFFPRITSVPTPMGNAIPVSQVREDVAVAYRKEIWWQTSEKLLPFKKMFAQRKVHVDVVTLEADDVVDAIIEEVTKCSINKLVIGVSSQGLFSRKLSGLSSRISALAPRYCTVYAISKGKLASIRPPDMDTDVSIRDDASEESSASSYSSYTSSSLTDGSSSLTTSYSHFPSPSPSLPLQRFQALSTINQPLLTKKPSLIKADHSRCQSIDIEVVDGVRSSSHVSDCTQTLSRASSSKSSPTENQSWISDEASSSGAFNDYSSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRELNHLNKQRSEEARKLEEINNKVVAAKEFAREERVKHEALRREAKYVKERAEREGIYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATLSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDSHKQMQLLQELEVLSRIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTPAIPWYERFRIAWEIASALVFLHSSKPKSIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPSMSTAFMNSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNSNLIKVLDIEAGHWPLEETYELARLGLRCAEMQRKDRPDLKDQVLPLLMTLKKVADEARNFASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWLQKNDNSPMTKLPLPDKNLIPNYSLLSAIVEWNSKRS
Length808
PositionTail
OrganismCucumis melo (Muskmelon)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.354
Instability index43.80
Isoelectric point7.33
Molecular weight90538.18
Publications
PubMed=22753475

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11738
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.19|      16|      66|     207|     227|       1
---------------------------------------------------------------------------
  188-  205 (23.25/10.46)	SIRDDASeeSSASSYSSY
  209-  224 (28.94/17.76)	SLTDGSS..SLTTSYSHF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.43|      23|      58|     241|     263|       2
---------------------------------------------------------------------------
  241-  263 (41.38/27.19)	TINQPLLTKKPSLIKA..DHSRCQS
  296-  320 (37.06/23.56)	TENQSWISDEASSSGAfnDYSSCES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.40|      32|      57|     329|     372|       3
---------------------------------------------------------------------------
  329-  360 (54.49/54.12)	EKLRIEL..RHARGMYAIAQRETI...........DASRELNHLN
  387-  431 (40.91/19.22)	ERVKHEAlrREAKYVKERAEREGIyrkeaetkalqDAKEKGKHEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.86|      12|      51|      36|      52|       4
---------------------------------------------------------------------------
   36-   52 (19.01/25.65)	IRW.SLEKFLPegiidFK
   88-  100 (21.85/13.59)	IWWqTSEKLLP.....FK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11738 with Med32 domain of Kingdom Viridiplantae
Unable to open file!