Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWNETFKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQDLSKMAVMHWKATNAGPLEKILHGSVGYLSPRSGGHLMNLKYYASPSDLLDDKTASPIILHENNVPRSLGMNASVTIEGTSAMYKLPIAPLVIGSHPADNKLTPSFSSITGANSVDLPACFFLKFPQPIPVSRAFVQKLQSCTGIPLFETQPTYVPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTKNHPMLMNLLKDNPAQDFSTLYGSSPLERQNSSGSPRMEMSSGSNKTKKKKSSRLPPDKPKHQTEDDFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYPQPVPHPQPSIQRMVRLSSSDSIGPDVTDILSDIAEEASKLPSTSDDCPPIGTPVRDSSSSGHSQSALFDPDVFQTNNNENPYTDPADLIADATGSPSSDSPTNHFFADGVDFNPDLLNSQSQSGFGEEYFDESSQSGDNDDFKGFASQTLNTLGVPVLGGDNGETKFKGGSQADTVDFSIITVGGKALGPAELMDHHSGSQSPLLTSGDLGKEKTQKRVKEGNGTSNPGLSGSGLDSKPGKRSRTPSNDGKSKDKPPKRKKADADGKSPSHSSSNRPFTPPTSTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSSSASNSGKMKSSKSEGLSSSKLSSSIYTSQGSSGSGQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPLSKPNISPSHSRPPGSSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSAGMKSSSGLGSSGSLSQKTPSSNSCTTSSSSFSSSSSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGEDPMDGQMGVSTNSSHSVSSKHSMLGGEFQGKREKSDKDKSKGSTAGSSVDSSKKTSESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNLDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDKDRDRDKDRDKKKSHSIKPESWSKSPISSDQPLSLTSNTILSTDRPSRLSPDFMIGEEDDDLMDVALIGN |
Length | 1577 |
Position | Middle |
Organism | Erinaceus europaeus (Western European hedgehog) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Eulipotyphla> Erinaceidae> Erinaceinae> Erinaceus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.670 |
Instability index | 54.28 |
Isoelectric point | 8.90 |
Molecular weight | 167699.28 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP11726 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 10| 502.60| 50| 50| 1082| 1131| 1 --------------------------------------------------------------------------- 982- 1027 (50.73/11.17) LSG.SGLDSK...PG.KRSR.....TPSNDGKSKDKP.PK..RKK...A..DADGKSP..SHSSSN 1030- 1080 (48.24/10.21) FTP.PT..ST...GG.SKSPGS.SGRSQTPPGVATPPiPKitIQI...P..KGTVMVG..KPSSHS 1082- 1131 (83.28/23.68) YTS.SGSVSS...SG.SKSHHS.HSSSSSSSSSASNS.GK..MKS...S..KSEGLSS..SKLSSS 1133- 1171 (49.34/10.63) YTS.QGS.SG...SG............QSKNSSQS.G.GK..PGS...SpiTKHGLSS..GS.SST 1173- 1208 (43.95/ 8.56) MKP.QGKPSSlmnPL.SKPNIS.PSH......................S..RPPG.SS..DKLASP 1209- 1258 (63.21/15.97) MKPvPGTPPS...SK.AKSPIS.SGSGGSHMSGTSSS.AG..MKS...S..SGLG.SS..GSLSQK 1266- 1312 (40.03/ 7.05) TTS.SSSFSS...S..........SSSMSSSQNQHGS.SK..GKSpsrN..KKPSLTAviDKLKHG 1375- 1427 (43.62/ 8.44) KTSeSKNVGS...TGvAKIIISkHDGGSPSIKAKVTL.QK..PGE...S..SGEGLRP..QMASSK 1429- 1464 (38.86/ 6.61) Y....GSPLI...SG.STPKHE.RGSPSHSKSPAYTP.QN..L.D...S..ESE............ 1507- 1554 (41.35/ 7.56) DKD.RDRDKD...RD.KKKSHS.IKPESWSKSPISSD.QP..LSL...T..SNTILST..DRPS.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.03| 16| 22| 876| 896| 2 --------------------------------------------------------------------------- 876- 896 (26.14/22.65) GFGEEYFdessqSGDNDD..FKG 904- 921 (23.90/ 9.57) TLGVPVL.....GGDNGEtkFKG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 143.51| 25| 65| 629| 653| 3 --------------------------------------------------------------------------- 541- 563 (24.71/ 7.90) .P..PAS......SpgY...GMTTGNNPMSGT...TTP 629- 653 (45.58/23.00) PP..PVS......S..M...AGNTKNHPMLMNLLKDNP 674- 699 (25.91/ 8.77) SPrmEMS......S..G...SNKTKKKKS.SRLPPDKP 734- 758 (23.98/ 7.38) TP..HITpapsqcS..T...PPTTYPQPV......PHP 759- 786 (23.33/ 6.90) QP..SIQ......R..MvrlSSSDSIGPDVTDILSDIA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 586.93| 161| 165| 112| 273| 4 --------------------------------------------------------------------------- 11- 154 (171.67/91.51) .............................EKLSKMSSllerLHAKFNQNRPWNE...............TFKLVRQVMEKRvvmsS.GGH....QHLVSCLETLQKalKVTSlPAMT....DRlESIARQNGLGSHLSA..SGTECYITSDMFYV.......eVQLDPA.GQ..LC...DVKVAHHGENPVSCPELVQQLREK..NFDEFSKHL 155- 311 (242.42/136.24) KGLV.NLYNLPGDNKLKTK.MYLALQSLeQDLSKMAV....MHWKATNAGPLEK...............ILHGSVGYLSPR....S.GGHLMNLKYYASPSDLLDD..KTAS.PIIL....HE.NNVPRSLGMNASVTI..EGTSAMYKLPIAPL.......vIGSHPAdNK..LT...PSFSSITGANSVDLPACF.........FLKFPQPI 315- 493 (172.83/92.41) RAFVqKLQSCTGIPLFETQpTYVPLYEL...ITQFEL....S..KDPDPIPLNHnmrfyaalpgqqhcyFLNKDAPLPDGR....SlQGTLVSKITFQHPGRV..........PLILnlirHQ.VAYNTLIGSCVKRTIlkEDSPGLLQFEVCPLsesrfsvsFQ.HPV.NDslVCvvmDVQDSTH....VSC.KLYKGLSDAliCTDDF.... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 66.97| 20| 20| 1324| 1343| 5 --------------------------------------------------------------------------- 1324- 1343 (35.06/18.40) MDGQMGVSTNSSHSVSSKHS 1345- 1364 (31.91/15.94) LGGEFQGKREKSDKDKSKGS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 75.54| 23| 42| 803| 826| 6 --------------------------------------------------------------------------- 803- 826 (37.37/24.60) GTPVRDSSSSgH..SQSALFDPDVFQ 846- 870 (38.17/20.07) GSPSSDSPTN.HffADGVDFNPDLLN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.18| 13| 21| 590| 602| 7 --------------------------------------------------------------------------- 590- 602 (24.17/12.67) GHGEDFSKVSQNP 612- 624 (24.01/12.52) GNGGSTIGSSPTP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FGEEYFD 2) IRPLPEYSTEKHKKHKKEKKKVKD 3) KITIQIPK 4) KPSLTAVIDKLKHGV 5) RLSPDFMIGEEDDDLMDV 6) SIKAKVTLQK 7) VAKIIISKH | 877 1484 1061 1299 1555 1401 1387 | 883 1507 1068 1313 1572 1410 1395 |
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