<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11715
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYVCEWEKWPRSTHCPSVPLACAWSCRNLIAFTTDLRNDEQDLTRTIHILDTEHPWDVHSIPSEHREAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESLTGSLVEGDPIVALSWLHNGVKLALHVEKSAASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLRPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFFKVCVSVVSDKCHIDTEILPSLFMRCTTDLARRDKFPAVTHLRFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTQFYPGLGLALAFHDGSVHIVHRLSLQSMAVFYGAAAPRSLDEPALKRPRPAGPAVHFKAVQLSWTSLALVAIDSHGKLSLLRVSPSLGHPLEVSLALRHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQSASLQQVLSTRILAMKASLCKLSPCTLTRVCDYHAKLFLIAVSSTLKSLLRPHFLNTPDKSPGDRLSEVCAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLTSLPNQGSPLRPGHSFLRDGPSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWTSCRDEGPANEPDETLLDECCLLPSQLLPPRLDWLPVSDGLASRLQPKQPLRLRFGQAPALPSSATALQLDGLLRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLRSPNAATAVQQWEQRWTKNCLCGGLWRRLPRSCP |
Length | 829 |
Position | Tail |
Organism | Erinaceus europaeus (Western European hedgehog) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Eulipotyphla> Erinaceidae> Erinaceinae>
Erinaceus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.020 |
Instability index | 55.32 |
Isoelectric point | 7.72 |
Molecular weight | 91807.37 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
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GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP11715
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 105.31| 30| 188| 441| 470| 1
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441- 470 (52.53/24.34) SLLRVSPSLGHPLEVSLALRHLLFLLEYCM
632- 661 (52.78/24.48) SFLRDGPSLGMLRELMVVIRIWGLLKPSCL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 92.37| 27| 188| 71| 119| 2
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71- 97 (51.34/18.92) AITCLEW...DQSGSRLL..SADADGQIKCWS
121- 131 ( 3.81/24.29) ...ALSW...LHNGVKL...............
267- 298 (37.22/ 9.39) AVTHLRFlarDMSEQVLLcaSSQTSSIVECWS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 149.52| 32| 33| 731| 762| 3
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696- 724 (49.17/23.97) EPD.ETL....LDECCLLPSQL.LPPRLDWLPVSD
731- 762 (55.31/27.87) QPK.QPL.RLRFGQAPALPSSA.TALQLDGLLRAP
764- 798 (45.04/21.35) QPKiDHLrRLHLGAYPTEECKAcTRCGCVTMLRSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 114.49| 36| 370| 146| 183| 4
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146- 183 (56.17/45.11) KFSRVKFSP.SLTLFGGKPMEGWIaVTVSGLVTvSLLRP
518- 554 (58.32/37.60) KASLCKLSPcTLTRVCDYHAKLFL.IAVSSTLK.SLLRP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.41| 33| 316| 33| 69| 5
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33- 69 (52.02/56.29) IAFT.TDLR..NDEQdLTRTIHILDTEHPWDVHSIpseHR
349- 384 (50.39/38.43) ISLTnTDLKvaNDTQ.FYPGLGLALAFHDGSVHIV...HR
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