<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11704

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMNVTNPRHPDSAGAEGTMENFTALFGTQADPPPPPTALGFGPGKPPPPPPPPPGGGPTTAPASASATAPPGADKSTAGCGPFYLMRELPGSTELTGSTNLITHYNLEATYSKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILSGSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPPKKKNKHKYKQSRTQDPVPPETPSDSDHKKKKKKKEEDPDRKRKKKEKKKKKSRHSPDHPGMGSSQASSSSSLR
Length261
PositionHead
OrganismErinaceus europaeus (Western European hedgehog)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Eulipotyphla> Erinaceidae> Erinaceinae> Erinaceus.
Aromaticity0.05
Grand average of hydropathy-0.988
Instability index56.25
Isoelectric point9.76
Molecular weight28017.57
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11704
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.91|      14|      16|      26|      39|       1
---------------------------------------------------------------------------
   26-   39 (27.81/ 9.29)	GTQADPPPPPTALG
   43-   56 (32.10/11.94)	GKPPPPPPPPPGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.62|      17|      39|     189|     210|       2
---------------------------------------------------------------------------
  189-  207 (24.36/19.13)	KKKNKHKyKQSRtQDPVPP
  231-  247 (31.26/ 9.18)	KKKEKKK.KKSR.HSPDHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.51|      17|     115|     131|     147|       3
---------------------------------------------------------------------------
   85-  100 (23.21/11.16)	.MRELPGSTELTGSTNL
  131-  147 (31.86/17.68)	GMIDLPGSHDNSSLRSL
  248-  260 (23.44/11.34)	GM....GSSQASSSSSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11704 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLPDLPGMIDLPGSHDNSSLRSLIEKPPILSGS
2) MNVTNPRHPDSAGAEGTMENFTALFGTQADPPPPPTALGFGPGKPPPPPPPPPGGGPTTAPASASATAPPGADKSTAGCGPFY
3) TMLAGFRLHTGPLPEQCRLMHIQPPKKKNKHKYKQSRTQDPVPPETPSDSDHKKKKKKKEEDPDRKRKKKEKKKKKSRHSPDHPGMGSSQASSSSSLR
125
1
164
157
83
261










Molecular Recognition Features






MoRF SequenceStartStop




1) DSDHKKKKKKKEEDPDRKRKKKEKKKKKSRHSPD
2) MENFTALFGT
212
18
245
27