<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11693

Description U-box domain-containing protein 52-like isoform X1
SequenceMSRSNIGSEKKLGAGRVVAVAIENNKTSQHAAKWAVENLLPKDQCLYLIHVKLRTSNASVPSGNYGDGNETVIDGESKDLFDSFRVFCNRKNIQCKEVLLEEMDISKALTECISSHAIELLVLGASTRGGIVRRFRTTDVPTSVSKSAPPFCTVYIISKGKISSVRSATAPVPKSAAPSPSPSPPHAGSYQLPQQQHSNPLMPTRSPDRFSDPQITRNYPPRPTSERHAAYGGFRQQGLDDEQEMISPFNRRGHKAYESSIPDSDISFVSSGRPSIDRIFPSLYNVDDLDNSSSGIPSRLSFGSDFDAKSSFASSFSGGGGQKSIDLSSPLDNYSFSSQGSANASSSLRLSDASDEVEAEMRRLKLELKQTMEMYSSACKEALTAKQKAIELQRWKSEEEKKLEEAREGEGAAMAMVEMEQEKCKAALKAAEASQRIAVLEAQKRMNVERKSEIEANQRKKSEDSFHSHGTTARYRRYSIEEIEDATKRFSDTLKIGEGGYGPVFKCELDHTQVAIKVLKSDAAQGRAQFNQEVEVLSCIRHPNMVLLLGACPEFGCIVYEYMANGSLDDCLFRRGKSPPLPWQLRFQIAAEIATGLLFLHQAKPEPIVHRDLKPGNILLDRNYVSKIGDVGLARLVPPSVQDTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTAKPPMGLTHHVGRSIEKGTFAEMLDPAVQDWPIEHALHFAKLSLQCAEMRRKDRPDLGKVVLPELNKLRIFADENMPMMMYRGGGAAFNPRGSGNYFINSTASSNQDNMSESNSLSGTSGGYESRSSTSSLGRL
Length822
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy-0.477
Instability index53.29
Isoelectric point7.55
Molecular weight90531.30
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11693
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.65|      34|      40|     163|     196|       1
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  136-  160 (22.77/ 9.36)	...RTTDVPtsVSKSAPPFCTVYIISKG........
  163-  196 (61.56/39.26)	SSVRSATAP..VPKSAAPSPSPSPPHAGSYQLPQQQ
  206-  237 (59.32/37.53)	SPDRFSDPQ..ITRNYPPRPT.SERHA.AYGGFRQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.02|      20|      22|     262|     282|       2
---------------------------------------------------------------------------
  272-  294 (30.55/16.95)	GRPSIDRI.FPS.....lynvDDLDNSSS
  295-  315 (23.23/11.05)	GIPS..RLsFGS..dfD....AKSSFASS
  321-  339 (21.25/12.17)	GQKSID......lsspL....DNYSFSSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.94|      22|      24|     385|     406|       3
---------------------------------------------------------------------------
  385-  406 (33.21/19.24)	AKQKAIELQRWKSE....EEKKLEEA
  412-  433 (28.38/15.49)	AAMAMVEMEQEKCK....AALKAAEA
  441-  465 (25.01/12.88)	EAQKRMNVER.KSEieanQRKKSEDS
  468-  486 (26.35/13.92)	SHGTTARYRRYSIE....E...IEDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.23|      23|     424|     112|     135|       5
---------------------------------------------------------------------------
  112-  135 (36.68/30.68)	CIsSHAIELLVLGASTR.GGIVRRF
  539-  562 (42.55/30.52)	CI.RHPNMVLLLGACPEfGCIVYEY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11693 with Med32 domain of Kingdom Viridiplantae
Unable to open file!