<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11692

Description U-box domain-containing protein 52-like isoform X2
SequenceMSRSNIGSEKKLGAGRVVAVAIENNKTSQHAAKWAVENLLPKDQCLYLIHVKLRTSNASVPSGNYGDGNETVIDGESKDLFDSFRVFCNRKNIQCKEVLLEEMDISKALTECISSHAIELLVLGASTRGGIVRFRTTDVPTSVSKSAPPFCTVYIISKGKISSVRSATAPVPKSAAPSPSPSPPHAGSYQLPQQQHSNPLMPTRSPDRFSDPQITRNYPPRPTSERHAAYGGFRQQGLDDEQEMISPFNRRGHKAYESSIPDSDISFVSSGRPSIDRIFPSLYNVDDLDNSSSGIPSRLSFGSDFDAKSSFASSFSGGGGQKSIDLSSPLDNYSFSSQGSANASSSLRLSDASDEVEAEMRRLKLELKQTMEMYSSACKEALTAKQKAIELQRWKSEEEKKLEEAREGEGAAMAMVEMEQEKCKAALKAAEASQRIAVLEAQKRMNVERKSEIEANQRKKSEDSFHSHGTTARYRRYSIEEIEDATKRFSDTLKIGEGGYGPVFKCELDHTQVAIKVLKSDAAQGRAQFNQEVEVLSCIRHPNMVLLLGACPEFGCIVYEYMANGSLDDCLFRRGKSPPLPWQLRFQIAAEIATGLLFLHQAKPEPIVHRDLKPGNILLDRNYVSKIGDVGLARLVPPSVQDTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTAKPPMGLTHHVGRSIEKGTFAEMLDPAVQDWPIEHALHFAKLSLQCAEMRRKDRPDLGKVVLPELNKLRIFADENMPMMMYRGGGAAFNPRGSGNYFINSTASSNQDNMSESNSLSGTSGGYESRSSTSSLGRL
Length821
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy-0.473
Instability index52.64
Isoelectric point7.24
Molecular weight90375.12
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP11692
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.65|      34|      40|     162|     195|       1
---------------------------------------------------------------------------
  135-  159 (22.77/ 8.89)	...RTTDVPtsVSKSAPPFCTVYIISKG........
  162-  195 (61.56/37.87)	SSVRSATAP..VPKSAAPSPSPSPPHAGSYQLPQQQ
  205-  236 (59.32/36.19)	SPDRFSDPQ..ITRNYPPRPT.SERHA.AYGGFRQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.14|      26|      79|     347|     372|       2
---------------------------------------------------------------------------
  347-  372 (40.06/28.29)	LRLSDASDE.VE..A.....EMRRLKLELKQTME
  375-  403 (20.23/10.60)	...SSACKEaLT..AkqkaiELQRWKSEEEKKLE
  427-  454 (31.85/20.96)	LKAAEASQR.IAvlE.....AQKRMNVERKSEIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      14|      18|     302|     319|       3
---------------------------------------------------------------------------
  302-  316 (20.90/20.76)	GSDFDaKSSFASSFS
  327-  340 (25.44/ 9.42)	SSPLD.NYSFSSQGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.35|      20|     423|     112|     132|       5
---------------------------------------------------------------------------
  112-  132 (30.47/24.27)	CIsSHAIELLVLGASTRGGIV
  538-  557 (40.88/28.07)	CI.RHPNMVLLLGACPEFGCI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.33|      18|      20|     257|     274|       6
---------------------------------------------------------------------------
  257-  274 (31.34/18.65)	ESSIPD....SDISFVSSGRPS
  276-  297 (25.99/14.12)	DRIFPSlynvDDLDNSSSGIPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11692 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FINSTASSNQDNMSESNSLSGTSGGYESRSSTSSL
2) SATAPVPKSAAPSPSPSPPHAGSYQLPQQQHSNPLMPTRSPDRFSDPQITRNYPPRPTSERHAAYGGFRQQGLDDEQEMISPFNRRGHKAYE
784
166
818
257










Molecular Recognition Features






MoRF SequenceStartStop




1) IDRIFPSLY
275
283