<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP11687

Description mediator of RNA polymerase II transcription subunit 6 isoform X1
SequenceMAAPGAGMMEGGVPTAQPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTSNNEQLRMRSLHPLDLSQLSKMTGTEYVLSEVMEPHLFIMRKQKRDSPDKVTPMLAYYILDGSIYQAPQLSNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSVDSENDTTLPEPKAASKETVDIKELKRVDHILASLQHKLPPAPPPPPFPEGYVPPSTAETEKGPETQEATESQAPSVDPIIDQGPAKRMKF
Length252
PositionHead
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.09
Grand average of hydropathy-0.447
Instability index55.16
Isoelectric point5.31
Molecular weight27966.55
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP11687
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.99|      23|      30|      16|      40|       1
---------------------------------------------------------------------------
   16-   40 (40.97/32.79)	AQPPGTDMTGIcfRDQLWLNS.YPLD
   49-   72 (41.02/24.96)	ALSPFYDWTSN..NEQLRMRSlHPLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.14|      22|      24|     114|     135|       2
---------------------------------------------------------------------------
  114-  135 (38.15/23.10)	YYILDGSIYQAPQLSNV.FAARI
  140-  162 (31.99/18.45)	YYIQKAFTTAASKLEKIgYAGSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP11687 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASLQHKLPPAPPPPPFPEGYVPPSTAETEKGPETQEATESQAPSVDPIIDQGPAKRMKF
194
252










Molecular Recognition Features






MoRF SequenceStartStop




1) PIIDQGPAKRMKF
2) RVDHILASLQ
240
188
252
197